Locus 5263

Sequence ID 3R_DroMel_CAF1
Location 13,728,529 – 13,728,623
Length 94
Max. P 0.649615
window8590

overview

Window 0

Location 13,728,529 – 13,728,623
Length 94
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 88.65
Mean single sequence MFE -30.53
Consensus MFE -28.58
Energy contribution -28.95
Covariance contribution 0.37
Combinations/Pair 1.08
Mean z-score -1.35
Structure conservation index 0.94
SVM decision value 0.24
SVM RNA-class probability 0.649615
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13728529 94 - 27905053
CAACUUUGGCCCCAGGCUCACUCCCAGUCCAAGUGUACUUGUGGCCCAUGGAGUGUGGCAUAAAAUUAGGCGCACCAAAGUUACAGACCCACUG
.((((((((.(((..(((((((((..(((((((....)))).)))....)))))).))).((....)))).)..)))))))).(((.....))) ( -26.50)
>DroSec_CAF1 1764 94 - 1
CAACUUUGGCCCCAGGCUCACUCCCAGUACGAGUGUGCUUGUGGCGCAUGGAGUGUGGCAUAAAAUUAGGCGCACCAAAGUUACAGGCCCACAC
.((((((((((.(((((.(((((.......))))).))))).))).......(((((.(.........).))))))))))))............ ( -33.20)
>DroSim_CAF1 2195 94 - 1
CAACUUUGGCCCCAGGCUCACUCCCAGUACGAGUGUGCUUGUGGCGCAUGGAGUGUGGCAUAAAAUUAGGCGCACCAAAGUUACAGGCCUACAC
.((((((((((.(((((.(((((.......))))).))))).))).......(((((.(.........).))))))))))))............ ( -33.20)
>DroEre_CAF1 1412 91 - 1
CAACUUUGGCCCCAGGCCCACUCCCAGCACGAGUGCGCUUGUGGUCCACGGAGUGUGGCAUGAAAUUAGGCGCACCAAG-UUACU--CCAUCGC
......(((((.(((((.(((((.......))))).))))).)).))).(((((((((..((........))..)))..-.))))--))..... ( -29.20)
>consensus
CAACUUUGGCCCCAGGCUCACUCCCAGUACGAGUGUGCUUGUGGCCCAUGGAGUGUGGCAUAAAAUUAGGCGCACCAAAGUUACAGGCCCACAC
.((((((((((.(((((.(((((.......))))).))))).))).......(((((.(.........).))))))))))))............ (-28.58 = -28.95 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:34 2006