Locus 5262

Sequence ID 3R_DroMel_CAF1
Location 13,727,103 – 13,727,195
Length 92
Max. P 0.787298
window8589

overview

Window 9

Location 13,727,103 – 13,727,195
Length 92
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 81.93
Mean single sequence MFE -26.92
Consensus MFE -19.34
Energy contribution -20.65
Covariance contribution 1.31
Combinations/Pair 1.17
Mean z-score -1.99
Structure conservation index 0.72
SVM decision value 0.58
SVM RNA-class probability 0.787298
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13727103 92 - 27905053
CCAUCA----------------CCCACCGCAGCGCCCGCUUUGCUGGAAGGCAAAGACAAACACGUUGACUUUGCCACAGAGAUUCGCCUUGAAGGUGGCAAACACAA
......----------------.......(((((....(((((((....))))))).......)))))..((((((((.(((......)))....))))))))..... ( -25.30)
>DroSec_CAF1 311 92 - 1
CCACCA----------------CCCACCGCAGCGCCCGCUUUGCUGGAAGGCAAAGACAAACACGUUGACUUUGCCACAGAGAUUCGCCUUGAAGGUGGCAAACACAA
(((((.----------------.(((.((.(((....))).)).)))..(((((((.(((.....))).)))))))..................)))))......... ( -27.40)
>DroSim_CAF1 258 92 - 1
CCACCA----------------CCCACCGCAGCGCCCGCUUUGCUGGAAGGCAAAGACAAACACGUUGACUUUGCCACAGAGAUUCGCCUUGAAGGUGGCAAACACAA
(((((.----------------.(((.((.(((....))).)).)))..(((((((.(((.....))).)))))))..................)))))......... ( -27.40)
>DroEre_CAF1 53 87 - 1
CCACCGC---------------------GGAGCGCCCGCUUUGCUGGAAGGCAAAGACAAACACGUUGACUUUGCCACAGAGAUUCGCCUUGAAGGUGGCAAACACAA
(((((((---------------------(((((....))))))).....(((((((.(((.....))).)))))))..................)))))......... ( -30.10)
>DroYak_CAF1 109 106 - 1
CCACCGC--CCACCACCCACCACCCACCAAAGCGCCCGCUUUGCUGGAAGGCAAAGACAAACACGUUGACUUUGCCACAGAGAUUCGCCUUGAAGGUGGCAAACACAA
.....((--(.(((.........(((.((((((....)))))).)))..(((((((.(((.....))).)))))))..................))))))........ ( -32.80)
>DroAna_CAF1 475 101 - 1
CCACU-CGU--CCCGCCCACCCCGCUCCAAAUUUUCCGC-UCGCUGGAAAGCAAAGACAAACACAUUGACUUUGCAG--AAAAUUCGCCUUGAAGGUG-CAAACACAA
.....-...--............((.((....((((((.-....))))))((((((.(((.....))).))))))..--...............)).)-)........ ( -18.50)
>consensus
CCACCA________________CCCACCGCAGCGCCCGCUUUGCUGGAAGGCAAAGACAAACACGUUGACUUUGCCACAGAGAUUCGCCUUGAAGGUGGCAAACACAA
(((((..................(((.((.(((....))).)).)))..(((((((.(((.....))).)))))))..................)))))......... (-19.34 = -20.65 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:33 2006