Locus 5261

Sequence ID 3R_DroMel_CAF1
Location 13,725,989 – 13,726,080
Length 91
Max. P 0.768184
window8588

overview

Window 8

Location 13,725,989 – 13,726,080
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 80.12
Mean single sequence MFE -16.98
Consensus MFE -9.81
Energy contribution -10.03
Covariance contribution 0.22
Combinations/Pair 1.12
Mean z-score -2.09
Structure conservation index 0.58
SVM decision value 0.52
SVM RNA-class probability 0.768184
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13725989 91 - 27905053
AAAUCUGCCUAAUUGAGCGAAAGCGUACCCAACAACCAAGGCGAAAAAAGGCAAACAAAUUUGCUCUCGAAUCAGUCAAUCGACUAACAAU
......((((......((....))((.....)).....))))((....(((((((....))))).))....))((((....))))...... ( -17.60)
>DroPse_CAF1 8252 69 - 1
AAAUCUGUUUAAUUGAGCGAAAG----------------------AAUUGGCAAGCAAAUUUGCUGUCAAAUCAGUCAAUCGUCUGGCAAU
.....((((....(((..((..(----------------------(.((((((.(((....))))))))).))..))..)))...)))).. ( -15.40)
>DroSec_CAF1 7908 91 - 1
AAAUCUGCCUAAUUGAGCGAAAGCGUACCAAACAACCAAGGCGAAAAAAGGCAAACAAAUUUGCUCUCGAAUCAGUCAAUCGACUAACAAU
......((((......((....))((.....)).....))))((....(((((((....))))).))....))((((....))))...... ( -17.60)
>DroSim_CAF1 5160 91 - 1
AAAUCUGCCUAAUUGAGCGAAAGCGUACCCAACAGCCAAGGCGAAAAAAGGCAAACAAAUUUGCUCUCGAAUCAGUCAAUCGACUAACAAU
.....(((((......((....))..........((....))......)))))....................((((....))))...... ( -17.80)
>DroEre_CAF1 8213 91 - 1
AAAUCUGCCUAAUUGAGCGAAAGCGUACCCAACAACCAAGGCGAAACAAGGCAAACAAAUUUGCUCUCGAAUCAGUCAAUCGACUAACAAU
......((((......((....))((.....)).....))))((..(.(((((((....))))).)).)..))((((....))))...... ( -18.10)
>DroPer_CAF1 8362 69 - 1
AAAUCUGUUUAAUUGAGCGAAAG----------------------AAUUGGCAAGCAAAUUUGCUGUCAAAUCAGUCAAUCGUCUGGCAAU
.....((((....(((..((..(----------------------(.((((((.(((....))))))))).))..))..)))...)))).. ( -15.40)
>consensus
AAAUCUGCCUAAUUGAGCGAAAGCGUACCCAACAACCAAGGCGAAAAAAGGCAAACAAAUUUGCUCUCGAAUCAGUCAAUCGACUAACAAU
............((((((....)).........................((((((....)))))).))))...((((....))))...... ( -9.81 = -10.03 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:32 2006