| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,724,423 – 13,724,536 |
| Length | 113 |
| Max. P | 0.920374 |
| Location | 13,724,423 – 13,724,536 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 94.69 |
| Mean single sequence MFE | -30.00 |
| Consensus MFE | -27.20 |
| Energy contribution | -27.87 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.920374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13724423 113 + 27905053 CACACACAUUCACAUUUUGCGGCUAACAAGAAAGCUGUAACAUGUAACUAACACACCGAGAGCUCUCUAUAAAGCGCACUUUAGUUUUGGCCAAGUGCAAUGGAGUUCGAAUG ......(((((((((.((((((((........)))))))).))))..............(((((((((....)).((((((..((....)).))))))...)))))))))))) ( -30.50) >DroSec_CAF1 6300 113 + 1 CACACACAUUCACAUUUUGCGGCUAACACGAAAGCUGUAACAUGUAACUAACACACCGAGAGCUCUCUACAAAGCGCACUUUAGUUUUGGCUAAGUGCAAUGGAGUUCGAAUG ......(((((((((.((((((((........)))))))).))))..............(((((((((....)).((((((.(((....)))))))))...)))))))))))) ( -33.40) >DroEre_CAF1 6555 112 + 1 CACACACAUUCACAUUUUGCGGCUAACACGAAAGCUGUAACAUGUAACUAACACACCGAGAGCUCUCUAUAAAGCGCACUUAAGU-UUGGCUAAGUGAAAUGGAUUCAGAAUG ......(((((((((.((((((((........)))))))).))))..........(((((....))).........((((((...-.....))))))....)).....))))) ( -26.10) >consensus CACACACAUUCACAUUUUGCGGCUAACACGAAAGCUGUAACAUGUAACUAACACACCGAGAGCUCUCUAUAAAGCGCACUUUAGUUUUGGCUAAGUGCAAUGGAGUUCGAAUG ......(((((((((.((((((((........)))))))).))))..........(((((....)))........((((((.(((....)))))))))...)).....))))) (-27.20 = -27.87 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:31 2006