Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,936,137 – 1,936,246 |
Length | 109 |
Max. P | 0.948193 |
Location | 1,936,137 – 1,936,246 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 71.80 |
Mean single sequence MFE | -30.58 |
Consensus MFE | -16.78 |
Energy contribution | -18.31 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.07 |
Mean z-score | -1.91 |
Structure conservation index | 0.55 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1936137 109 + 27905053 CGCAGGCACUUUUCCAGAGUCUGGGCAUCACCAGAAAGGUCAGCUAGUGCCUGGAAAGUAC-AAGUUACAUUGAUUUGUUGGUUCCAACGCAAAAUGAGCUUUAAGCAAU .(((((((((...((....(((((......)))))..))......)))))))((((...((-(((((.....)))))))...))))...)).......((.....))... ( -34.40) >DroVir_CAF1 113366 86 + 1 CUCAGGCACUUCUCCAAAAUCUGCGCAUCGCCCGUGAGAUCGGCUACGGUCUGCAAAAUGUUGGGUUGCUUUUCUUUUUUUUUUUC------------------------ ...(((((...(.((((....((((.((((.(((......)))...)))).)))).....))))).)))))...............------------------------ ( -17.60) >DroSec_CAF1 94377 104 + 1 CGCAGGCACUUUUCCAGAGUCUGGGCAUCACCAGAAAGGUCAGCUAGUGCCUGCAAAGCAC-AGGUCACUUUAAUUUGUUGGUUUCA-----AAGUGAGCUUUAACAAAU .(((((((((...((....(((((......)))))..))......)))))))))(((((..-...(((((((((((....))))..)-----)))))))))))....... ( -35.20) >DroSim_CAF1 95755 104 + 1 CGCAGGCACUUUUCCAGAGUCUGGGCAUCACCAGAAAGGUCAGCUAGUGCCUGCAAAGCAC-AGGUCACUUUAAUUUGUUGGUUUCA-----AAGUGAGCUUUAACAAAU .(((((((((...((....(((((......)))))..))......)))))))))(((((..-...(((((((((((....))))..)-----)))))))))))....... ( -35.20) >DroEre_CAF1 96618 109 + 1 CGCAGGCACUUUUCCAGCGUCUGGGCAUCUCCAGCAAGGUCAGCUACUGCCUGCGAAGCAU-AGGCUACUUUAGCUUCUUGGCUAAAACGCAGAAGGAGCUUUAACAAAU ((((((((....(((((...))))).......(((.......)))..)))))))).(((..-..))).....((((((((.((......))..))))))))......... ( -33.30) >DroYak_CAF1 100252 94 + 1 CGCAUGCACUUUUCCAGCGUCUGGGCAUCACCAGAAAGGUCAGCUAGUGCCUGCAAAGUAC-GGGCUACUUUAGUUUGUUGGCUGAAACGCACAA--------------- ....(((..(((.(((((((((((......)))))(((((.((((.((((.......))))-.)))))))))....))))))..)))..)))...--------------- ( -27.80) >consensus CGCAGGCACUUUUCCAGAGUCUGGGCAUCACCAGAAAGGUCAGCUAGUGCCUGCAAAGCAC_AGGUUACUUUAAUUUGUUGGUUUCA_____AAAUGAGCUUUAACAAAU .(((((((((.........(((((......)))))..........)))))))))........................................................ (-16.78 = -18.31 + 1.53)
Location | 1,936,137 – 1,936,246 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 71.80 |
Mean single sequence MFE | -29.68 |
Consensus MFE | -16.63 |
Energy contribution | -18.22 |
Covariance contribution | 1.59 |
Combinations/Pair | 1.21 |
Mean z-score | -1.71 |
Structure conservation index | 0.56 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1936137 109 - 27905053 AUUGCUUAAAGCUCAUUUUGCGUUGGAACCAACAAAUCAAUGUAACUU-GUACUUUCCAGGCACUAGCUGACCUUUCUGGUGAUGCCCAGACUCUGGAAAAGUGCCUGCG .......((((..((..(((((((((..........)))))))))..)-)..)))).((((((((.(((.(((.....))).).))((((...))))...)))))))).. ( -31.30) >DroVir_CAF1 113366 86 - 1 ------------------------GAAAAAAAAAAAGAAAAGCAACCCAACAUUUUGCAGACCGUAGCCGAUCUCACGGGCGAUGCGCAGAUUUUGGAGAAGUGCCUGAG ------------------------.................(((.(((((.((((((((..((((((.....)).))))....)))).)))).)))).)...)))..... ( -16.60) >DroSec_CAF1 94377 104 - 1 AUUUGUUAAAGCUCACUU-----UGAAACCAACAAAUUAAAGUGACCU-GUGCUUUGCAGGCACUAGCUGACCUUUCUGGUGAUGCCCAGACUCUGGAAAAGUGCCUGCG .......(((((((((((-----(((..........)))))))))...-..)))))(((((((((.(((.(((.....))).).))((((...))))...))))))))). ( -36.40) >DroSim_CAF1 95755 104 - 1 AUUUGUUAAAGCUCACUU-----UGAAACCAACAAAUUAAAGUGACCU-GUGCUUUGCAGGCACUAGCUGACCUUUCUGGUGAUGCCCAGACUCUGGAAAAGUGCCUGCG .......(((((((((((-----(((..........)))))))))...-..)))))(((((((((.(((.(((.....))).).))((((...))))...))))))))). ( -36.40) >DroEre_CAF1 96618 109 - 1 AUUUGUUAAAGCUCCUUCUGCGUUUUAGCCAAGAAGCUAAAGUAGCCU-AUGCUUCGCAGGCAGUAGCUGACCUUGCUGGAGAUGCCCAGACGCUGGAAAAGUGCCUGCG ........((((.....((((...(((((......))))).))))...-..))))(((((((....(((..((.((((((......)))).))..))...)))))))))) ( -32.30) >DroYak_CAF1 100252 94 - 1 ---------------UUGUGCGUUUCAGCCAACAAACUAAAGUAGCCC-GUACUUUGCAGGCACUAGCUGACCUUUCUGGUGAUGCCCAGACGCUGGAAAAGUGCAUGCG ---------------.((..(.(((((((...........(((.(((.-((.....)).))))))..........(((((......))))).)))))))..)..)).... ( -25.10) >consensus AUUUGUUAAAGCUCAUUU_____UGAAACCAACAAAUUAAAGUAACCU_GUACUUUGCAGGCACUAGCUGACCUUUCUGGUGAUGCCCAGACUCUGGAAAAGUGCCUGCG ......................................((((((......))))))(((((((((.((..(((.....)))...))((((...))))...))))))))). (-16.63 = -18.22 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:15 2006