| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,714,934 – 13,715,024 |
| Length | 90 |
| Max. P | 0.818152 |
| Location | 13,714,934 – 13,715,024 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 76.92 |
| Mean single sequence MFE | -14.17 |
| Consensus MFE | -9.41 |
| Energy contribution | -9.47 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.818152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13714934 90 - 27905053 CUUCAAUCGCAGCUUGCCAACUUCCAGUGGCACUCAGCCCCACACAC--AGAUACAUGCAU--UACAUACAAACAAGCGAACAUU-UCCGUUCCC ......((((.((((((((........)))))...))).........--......(((...--..)))........)))).....-......... ( -13.20) >DroSim_CAF1 27152 89 - 1 CUUCAAUCGCAGCUUGCCAACUUCCAGUGGCACUCAGCCCCACACAC--AGAUACAUGCAUAC---AUACAAACAAGCGAACAUU-UCCGCCCCC ......((((.((((((((........)))))...))).........--......(((....)---))........)))).....-......... ( -13.20) >DroEre_CAF1 25227 84 - 1 CUUCAAUCGCAGCUUGCCCACUUCCAGUGGCACUCAGCCCCACACACACAGAUACA---------AAUGAAAACAAGCGAACAUU-UCCGCC-CC ......((((.(((((((.((.....))))))...)))..........((......---------..)).......)))).....-......-.. ( -13.00) >DroAna_CAF1 14473 76 - 1 CUUCAAUCGCAGCUUGCC-ACUUUCUGUGGCACUCAGACCCCAACAC--GGUUACAUACA---------------UGUGAACAUCCUCUGGU-CC ...........(..((((-((.....))))))..).((((.......--..(((((....---------------))))).........)))-). ( -17.27) >consensus CUUCAAUCGCAGCUUGCCAACUUCCAGUGGCACUCAGCCCCACACAC__AGAUACAUGCA______AUACAAACAAGCGAACAUU_UCCGCC_CC ......((((.(((((((.((.....))))))...)))......(.....).........................))))............... ( -9.41 = -9.47 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:28 2006