| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,713,204 – 13,713,294 |
| Length | 90 |
| Max. P | 0.631580 |
| Location | 13,713,204 – 13,713,294 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 77.49 |
| Mean single sequence MFE | -27.73 |
| Consensus MFE | -17.60 |
| Energy contribution | -17.72 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13713204 90 - 27905053 CAAUCCGAAACCC----------A-AACAUGA--CGAUCCAGCUCGAUCUAAACGAGCGUCGGUCCCGACGUGACAUGUCGCCCCAGGGCCGCAAACGGGUGG .........((((----------.-.(((((.--.......(((((.......)))))((((....))))....))))).(((....))).......)))).. ( -29.90) >DroVir_CAF1 11872 85 - 1 -------AAA--------AUAUCA-AAUCACA--UAAUUCAGCUCGAUCUAAACGAGCGUCGCUCCAGACGUGACAUGUCACCCCAGGGCCGCAAACGGGUGG -------...--------......-..((((.--.......(((((.......)))))(((......))))))).....(((((...(....)....))))). ( -21.70) >DroPse_CAF1 11076 89 - 1 GUAUCCGU---UC----------A-ACCAUGAUCCGAUCCAGCUCGAUCUAAACGAGCGUCGAUCCAGACGCGACAUGUCACCGCAGGGCCGCAAACGGGUGG .(((((((---((----------(-....)))..((..((.(((((.......)))))(((......)))(((.........))).))..))...))))))). ( -25.70) >DroEre_CAF1 23539 99 - 1 CAACCCAAACCCCAAACGAUCC-A-AACACGA--CGAUCCAGCUCGAUCUAAACGAGCGUCGGUCCCGACGUGACAUGUCGCCCCAGGGCCGCAAACGGGUGG ..((((................-.-..(((..--.......(((((.......)))))((((....)))))))...(((.(((....))).)))...)))).. ( -31.80) >DroYak_CAF1 31808 97 - 1 CAAUCCACACCUU---CAAUCC-ACAAUCCGA--CGAUCCAGCUCGAUCUAAACGAGCGUCGGUCCCGACGUGACAUGUCGCCCCAGGGCCGCAAAAGGGUGG ....((((.((((---.....(-((.......--.......(((((.......)))))((((....)))))))...(((.(((....))).))).)))))))) ( -33.70) >DroAna_CAF1 12946 95 - 1 --UUCCAAAUCCA---UAAUCCGA-AAUCCAA--CGAUCCAGCUCGAUCUAAACGAGCGUCGCUCCAGACGCGACAUGUCUCCCCAGGGCCGCAAACGCGUGG --........(((---(.......-.......--.(..((.(((((.......)))))(((((.......)))))...........))..)((....)))))) ( -23.60) >consensus CAAUCCAAAACCC_____AUCC_A_AACACGA__CGAUCCAGCUCGAUCUAAACGAGCGUCGGUCCAGACGUGACAUGUCGCCCCAGGGCCGCAAACGGGUGG .....................................(((.(((((.......)))))(((......)))((((....))))....)))((((......)))) (-17.60 = -17.72 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:27 2006