Locus 5252

Sequence ID 3R_DroMel_CAF1
Location 13,700,888 – 13,700,992
Length 104
Max. P 0.667514
window8575

overview

Window 5

Location 13,700,888 – 13,700,992
Length 104
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 94.67
Mean single sequence MFE -16.70
Consensus MFE -16.38
Energy contribution -16.82
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.07
Structure conservation index 0.98
SVM decision value 0.28
SVM RNA-class probability 0.667514
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13700888 104 + 27905053
UUUUGUCAAAUGUUAUCCGUUAU-AUAUGUGUAUAUGUAUAUAUAGACUGCCUUUACAUUUAUCAUUUAGCUGUAUUCCGUAGUUACGUCUUUAAACAUUUUACU-
....((.(((((((.........-.((((((((....))))))))((((((...((((.(((.....))).))))....)))))).........))))))).)).- ( -18.00)
>DroSec_CAF1 10710 104 + 1
GUUUGUCAAAUGUUAUCCGUUAU-AUAUGUGUAUAUGUAUAUAUAGACUGCCUUUACAUUUAUCAUUUAGCUGUAUUCCGUAGUUACGUCUUUAAACAUUUUACU-
....((.(((((((.........-.((((((((....))))))))((((((...((((.(((.....))).))))....)))))).........))))))).)).- ( -18.00)
>DroSim_CAF1 10788 104 + 1
GUUUGUCAAAUGUUAUCCGUUAU-AUAUGUGUAUAUGUAUAUAUAGACUGCCUUUACAUUUAUCAUUUAGCUGUAUUCCGUAGUUACGUCUUUAAACAUUUUACU-
....((.(((((((.........-.((((((((....))))))))((((((...((((.(((.....))).))))....)))))).........))))))).)).- ( -18.00)
>DroEre_CAF1 11077 105 + 1
UUUUGUCAAAUGUUAUCCGUUAU-AUAUGUGUAUAUGUAUAUAUAGACUGCCUCUACAUUUAUCAUUUAGCUGUAUUCCGUAGUUACGUUUUUAAACAUUUUACUG
....((.(((((((.........-.((((((((....))))))))((((((...((((.(((.....))).))))....)))))).........))))))).)).. ( -17.30)
>DroYak_CAF1 19395 105 + 1
UUUUGUCAAAUGUUAUCCGUUAUUGUAUGUGUAUAUGUAUACAUAGACUGCCUCUACCUUUAUCGUUUAGCUUUAUUCCGUAGUUACGUU-UUAAACAAUUUACUG
..((((.((((((............((((((((....))))))))((((((............................)))))))))))-)...))))....... ( -12.19)
>consensus
UUUUGUCAAAUGUUAUCCGUUAU_AUAUGUGUAUAUGUAUAUAUAGACUGCCUUUACAUUUAUCAUUUAGCUGUAUUCCGUAGUUACGUCUUUAAACAUUUUACU_
....((.(((((((...........((((((((....))))))))((((((...((((.(((.....))).))))....)))))).........))))))).)).. (-16.38 = -16.82 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:19 2006