Locus 5251

Sequence ID 3R_DroMel_CAF1
Location 13,699,346 – 13,699,466
Length 120
Max. P 0.633913
window8574

overview

Window 4

Location 13,699,346 – 13,699,466
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -18.76
Consensus MFE -18.76
Energy contribution -18.60
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.16
Structure conservation index 1.00
SVM decision value 0.21
SVM RNA-class probability 0.633913
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13699346 120 - 27905053
UGCAUAUCCAUCCAAGCAGCGGCUUCCUAGAUCAGAACUAAACAACUUAGAGAUACGUAAUGAAAUGCCGAAACACAGGGACAAUGCAUUCAAAAUGUUGCUGCAAAAAAAUCACAAAAA
...............((((((((..............((((.....))))......(.((((...((((.........)).))...))))).....))))))))................ ( -18.00)
>DroSec_CAF1 9160 120 - 1
UGCAUAUCCAUCCAAGCAGCAGCUUCCUAUAUCAGAACUAAACAACUUAGAGAUACGUAAUGAAAUGCCGAAACACAGGGACAAUGCAUUCAAAAUGUUGCUGCAAAAAAAUCACAAAAA
...............((((((((......((((....((((.....)))).)))).(.((((...((((.........)).))...))))).....))))))))................ ( -19.00)
>DroSim_CAF1 9238 120 - 1
UGCAUAUCCAUCCAAGCAGCAGCUUCCUAUAUCAGAACUAAACAACUUAGAGAUACGUAAUGAAAUGCCGAAACACAGGGACAAUGCAUUCAAAAUGUUGCUGCAAAAAAAUCACAAAAA
...............((((((((......((((....((((.....)))).)))).(.((((...((((.........)).))...))))).....))))))))................ ( -19.00)
>DroEre_CAF1 9501 120 - 1
UGCAUAUCCAUCCAAGCAGCAGCUUCCUAUAUCAGAACUAAACAACUUAGAGAUACGUAAUGAAAUGCCGAAACACAGGGACAAUGCAUUCAAAAUGUUGCUGCAAAAAAAUCACAAAAA
...............((((((((......((((....((((.....)))).)))).(.((((...((((.........)).))...))))).....))))))))................ ( -19.00)
>DroYak_CAF1 9781 120 - 1
UGCAUCUCCAUCCAAGCAGCAGCUUCCUUUAUCAGAACUAAACAAUUUAGAGAUACGUAAUGAAAUGCCGAAACACAGGGACAAUGCAUUCAAAAUGUUGCUGCAAAAAAAUCACAAAAA
...............((((((((...(((((................)))))....(.((((...((((.........)).))...))))).....))))))))................ ( -18.79)
>consensus
UGCAUAUCCAUCCAAGCAGCAGCUUCCUAUAUCAGAACUAAACAACUUAGAGAUACGUAAUGAAAUGCCGAAACACAGGGACAAUGCAUUCAAAAUGUUGCUGCAAAAAAAUCACAAAAA
...............((((((((..............((((.....))))......(.((((...((((.........)).))...))))).....))))))))................ (-18.76 = -18.60 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:18 2006