Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,932,608 – 1,932,715 |
Length | 107 |
Max. P | 0.842808 |
Location | 1,932,608 – 1,932,715 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 89.06 |
Mean single sequence MFE | -28.57 |
Consensus MFE | -25.11 |
Energy contribution | -25.67 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -2.13 |
Structure conservation index | 0.88 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842808 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1932608 107 + 27905053 AUGAAUCGAACCGGAAUCUCGUUUUAGCAUAAACCCGAACCGGUUCGCAAACUGGAACCAUAUCAAUAGGUUUGGCCCGAACCAGAAUCGGAACAAAGCGGAAAAUG .(((..((((((((..((..((((......))))..)).)))))))).....((....))..)))...(.((((..((((.......))))..)))).)........ ( -25.30) >DroSec_CAF1 90839 106 + 1 AUGAAUCGAACCGGAAUCUCGUUUUAGCAUAAACGCGAACCGGUUCACAGACCGGAACCUUAUCAAUUGGUUAGGUUCGAACCGCGAACGGAACCAAGCC-AAAAUA .......(((((((..((.(((((......))))).)).))))))).......((...........((((((..(((((.....)))))..)))))).))-...... ( -30.90) >DroSim_CAF1 92266 106 + 1 AUGAAUCGAACCGGAAUCUCGUUUUAGCAUAAACGCGAACCGGUUCACAAACCGGAACCUUAUCAAUAGGUUAGGUUCGAACCCCGAACGGAACCAAGCC-AAAAUG .......(((((((..((.(((((......))))).)).))))))).....(((((((((.(((....))).))))))(.....)...))).........-...... ( -29.50) >consensus AUGAAUCGAACCGGAAUCUCGUUUUAGCAUAAACGCGAACCGGUUCACAAACCGGAACCUUAUCAAUAGGUUAGGUUCGAACCACGAACGGAACCAAGCC_AAAAUG .....(((((((((..((.(((((......))))).)).)))))))........((((((.(((....))).)))))))).((......))................ (-25.11 = -25.67 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:13 2006