Locus 5249

Sequence ID 3R_DroMel_CAF1
Location 13,696,980 – 13,697,100
Length 120
Max. P 0.997475
window8571

overview

Window 1

Location 13,696,980 – 13,697,100
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.33
Mean single sequence MFE -23.40
Consensus MFE -22.04
Energy contribution -22.04
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.03
Structure conservation index 0.94
SVM decision value 2.87
SVM RNA-class probability 0.997475
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13696980 120 + 27905053
AUUUAUACAUGCUAUGCUCGUAUACAAUGUGUAAGAUAAUAAGCUAAUCGAGUUUAAGUAAUCAAUGUAAACUAAAGUUUAUCAUAUCAUAUAUGAAUGAAUAUCGAUAGCUAACUGUAA
.(((((((((..((((....))))..)))))))))......(((((.(((((((((...........(((((....)))))((((((...)))))).))))).)))))))))........ ( -23.50)
>DroSec_CAF1 6800 114 + 1
AUUUAUACAUGCUAUGCUCGUAUACAAUGUGUAAGAUAAUAAGCUAAUCGAGUUUAAGUAAUCAAUGUAAACUAAAGUUUAUCAUAUCAUAUAUGAA------UCGAUAGCUAACUGUAA
.(((((((((..((((....))))..)))))))))......(((((.((((.((((.(((....((((((((....))))).)))....))).))))------)))))))))........ ( -22.80)
>DroSim_CAF1 6871 120 + 1
AUUUAUACAUGCUAUGCUCGUAUACAAUGUGUAAGAUAAUAAGCUAAUCGAGUUUAAGUAAUCAAUGUAAACUAAAGUUUAUCAUAUCAUAUAUGAAUGAAUAUCGAUAGCUAACUGUAA
.(((((((((..((((....))))..)))))))))......(((((.(((((((((...........(((((....)))))((((((...)))))).))))).)))))))))........ ( -23.50)
>DroEre_CAF1 7153 120 + 1
AUUUAUACAUGCUAUGCUCGUAUACAAUGUGUAAGAUAAUAAGCUAAUCGAGUUUAAGUAAUCAAUGUAAACUAAAGUUUAUCAUAUCAUAUAUGAAUGAAUAUCGAUAGCUAAGUGUAA
.(((((((((..((((....))))..)))))))))(((...(((((.(((((((((...........(((((....)))))((((((...)))))).))))).)))))))))...))).. ( -23.70)
>DroYak_CAF1 7491 120 + 1
AUUUAUACAUGCUAUGCUCGUAUACAAUGUGUAAGAUAAUAAGCUAAUCGAGUUUAAGUAAUCCAUGUAAACUAAAGUUUAUCAUAUCAUAUAUGAAUGAAUAUCGAUAGCUAACUGUAA
.(((((((((..((((....))))..)))))))))......(((((.(((((((((...........(((((....)))))((((((...)))))).))))).)))))))))........ ( -23.50)
>consensus
AUUUAUACAUGCUAUGCUCGUAUACAAUGUGUAAGAUAAUAAGCUAAUCGAGUUUAAGUAAUCAAUGUAAACUAAAGUUUAUCAUAUCAUAUAUGAAUGAAUAUCGAUAGCUAACUGUAA
.(((((((((..((((....))))..)))))))))......(((((.((((................(((((....)))))((((((...)))))).......)))))))))........ (-22.04 = -22.04 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:15 2006