Locus 5247

Sequence ID 3R_DroMel_CAF1
Location 13,696,319 – 13,696,439
Length 120
Max. P 0.959967
window8568 window8569

overview

Window 8

Location 13,696,319 – 13,696,439
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 97.50
Mean single sequence MFE -48.56
Consensus MFE -45.30
Energy contribution -45.30
Covariance contribution 0.00
Combinations/Pair 1.05
Mean z-score -1.61
Structure conservation index 0.93
SVM decision value 1.51
SVM RNA-class probability 0.959967
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13696319 120 + 27905053
ACCAAGGCGGCGGAGUCGCCGUACGGACACCUGGGCUACGGAGCUGGUCACCACGCCUUCGCAAAGCUGCCGCACGAGACGCAUCCCACGAUUCCGGAGGAUCGCGACUCCGCCAACUAC
....((..((((((((((((((.(((.((.((..((...((.(((((...))).))))..))..)).))))).)))....(.((((..((....))..))))))))))))))))..)).. ( -49.40)
>DroSec_CAF1 6147 120 + 1
ACCAAGGCGGCGGAGUCGCCCUAUGGACACCUGGGCUACGGAGCUGGUCACCACGCCUUCGCAAAGCUGCCGCACGAGACGCAUCCCACGAUUCCGGAGGAUCGCGACUCCGCCAACUAC
....((..(((((((((((((...((...)).))))..(((((((((...))..((....))..)))).)))........((((((..((....))..)))).)))))))))))..)).. ( -47.00)
>DroSim_CAF1 6214 120 + 1
ACCAAGGCGGCGGAGUCGCCCUAUGGACACCUGGGCUACGGAGCUGGUCACCACGCCUUCGCAAAGCUGCCGCACGAGACGCAUCCCACGAUUCCGGAGGAUCGCGACUCCGCCAACUAC
....((..(((((((((((((...((...)).))))..(((((((((...))..((....))..)))).)))........((((((..((....))..)))).)))))))))))..)).. ( -47.00)
>DroEre_CAF1 6489 120 + 1
ACCAAGGCGGCGGAGUCGCCCUACGGACACCUGGGCUACGGAGCUGGUCACCACGCCUUCGCAAAGCUGCCGCUCGAGACGCAUCCCACGAUUCCGGAGGAUCGCGACUCCGCCAACUAC
....((..((((((((((((((.((((..(.((((...((((((.(((......)))...(((....))).))))....))...)))).)..)))).)))...)))))))))))..)).. ( -49.00)
>DroYak_CAF1 6840 120 + 1
ACCAAGGCGGCGGAGUCGCCCUACGGACACUUGGGCUACGGAGCUGGUCACCACGCCUUCGUGAAGCUGCCGCACGAGACUCAUCCCACGAUUCCGGAGGAUCGCGACUCCGCCAACUAC
....((..((((((((((((((.((((..(.((((.....(((((.((...((((....))))..((....)))).)).)))..)))).)..)))).)))...)))))))))))..)).. ( -50.40)
>consensus
ACCAAGGCGGCGGAGUCGCCCUACGGACACCUGGGCUACGGAGCUGGUCACCACGCCUUCGCAAAGCUGCCGCACGAGACGCAUCCCACGAUUCCGGAGGAUCGCGACUCCGCCAACUAC
....((..((((((((((((((.((((..(.((((....((((((((...))..((....))..)))).))((.......))..)))).)..)))).)))...)))))))))))..)).. (-45.30 = -45.30 +   0.00)

alignment

Postscript

secondary structure

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dotplot

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Window 9

Location 13,696,319 – 13,696,439
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -57.54
Consensus MFE -53.40
Energy contribution -54.24
Covariance contribution 0.84
Combinations/Pair 1.02
Mean z-score -1.61
Structure conservation index 0.93
SVM decision value 1.47
SVM RNA-class probability 0.957132
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13696319 120 - 27905053
GUAGUUGGCGGAGUCGCGAUCCUCCGGAAUCGUGGGAUGCGUCUCGUGCGGCAGCUUUGCGAAGGCGUGGUGACCAGCUCCGUAGCCCAGGUGUCCGUACGGCGACUCCGCCGCCUUGGU
..((.((((((((((((.((((..((....))..))))......(((((((((.((..((...((.(((....)..)).))...))..)).)).))))))))))))))))))).)).... ( -57.40)
>DroSec_CAF1 6147 120 - 1
GUAGUUGGCGGAGUCGCGAUCCUCCGGAAUCGUGGGAUGCGUCUCGUGCGGCAGCUUUGCGAAGGCGUGGUGACCAGCUCCGUAGCCCAGGUGUCCAUAGGGCGACUCCGCCGCCUUGGU
..((.((((((((((((...(((..(((..(.((((.((((....(.((((..(((.(((....))).)))..)).)).))))).)))).)..)))..))))))))))))))).)).... ( -55.50)
>DroSim_CAF1 6214 120 - 1
GUAGUUGGCGGAGUCGCGAUCCUCCGGAAUCGUGGGAUGCGUCUCGUGCGGCAGCUUUGCGAAGGCGUGGUGACCAGCUCCGUAGCCCAGGUGUCCAUAGGGCGACUCCGCCGCCUUGGU
..((.((((((((((((...(((..(((..(.((((.((((....(.((((..(((.(((....))).)))..)).)).))))).)))).)..)))..))))))))))))))).)).... ( -55.50)
>DroEre_CAF1 6489 120 - 1
GUAGUUGGCGGAGUCGCGAUCCUCCGGAAUCGUGGGAUGCGUCUCGAGCGGCAGCUUUGCGAAGGCGUGGUGACCAGCUCCGUAGCCCAGGUGUCCGUAGGGCGACUCCGCCGCCUUGGU
..((.((((((((((((...(((.((((..(.((((.((((....((((((..(((.(((....))).)))..)).)))))))).)))).)..)))).))))))))))))))).)).... ( -63.10)
>DroYak_CAF1 6840 120 - 1
GUAGUUGGCGGAGUCGCGAUCCUCCGGAAUCGUGGGAUGAGUCUCGUGCGGCAGCUUCACGAAGGCGUGGUGACCAGCUCCGUAGCCCAAGUGUCCGUAGGGCGACUCCGCCGCCUUGGU
..((.((((((((((((...(((.((((....(((((((.....)))((((.(((((((((....))))).....))))))))..))))....)))).))))))))))))))).)).... ( -56.20)
>consensus
GUAGUUGGCGGAGUCGCGAUCCUCCGGAAUCGUGGGAUGCGUCUCGUGCGGCAGCUUUGCGAAGGCGUGGUGACCAGCUCCGUAGCCCAGGUGUCCGUAGGGCGACUCCGCCGCCUUGGU
..((.((((((((((((...(((.((((..(.((((.((((....(.((((..(((.(((....))).)))..)).)).))))).)))).)..)))).))))))))))))))).)).... (-53.40 = -54.24 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:13 2006