Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,695,481 – 13,695,601 |
Length | 120 |
Max. P | 0.997473 |
Location | 13,695,481 – 13,695,601 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.33 |
Mean single sequence MFE | -35.87 |
Consensus MFE | -34.35 |
Energy contribution | -33.71 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.10 |
Mean z-score | -1.96 |
Structure conservation index | 0.96 |
SVM decision value | 2.87 |
SVM RNA-class probability | 0.997473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13695481 120 - 27905053 GAGAGUGGGGAGUCAGUGAAAGUGGUAAAGGAGCUCCUGGGAUAAUGAGAGAUUCUAGGAGAUGACAGUAGGGGCUCUGCUUCAGUGUGGCCCCUCCUGCAAGUGAAAACGAAAUCAAGU ..(((..(((.((((..................((((((((((........)))))))))).))))....((((((..((....))..)))))))))..)..((....))....)).... ( -37.91) >DroSec_CAF1 5311 120 - 1 GAGAGUGGGGAGUCAGUGAAAGUGGUGAAGGAGCUGCUGGGAUAAUGAGAGAUUCUAGGAGAUGACAGUAGGGGCUCUGCUUCAGUGUGGCCCCUCCUGCAAGUGAAAACGAAAUCAAAU ..(((..(((.((((..................((.(((((((........))))))).)).))))....((((((..((....))..)))))))))..)..((....))....)).... ( -33.21) >DroSim_CAF1 5380 120 - 1 GAGAGCGGGGAGUCAGUGAAAGUGGUGAAGGAGCUGUUGGGAUAAUGAGAGAUUCUAGGAGAUGACAGUAGGGGCUCUGCUUCAGUGUGGCCCCUCCUGCAAGUGAAAACGAAAUCAAAU ..((((((((.((((..................((.(((((((........))))))).)).))))....((((((..((....))..))))))))))))..((....))....)).... ( -33.61) >DroEre_CAF1 5667 120 - 1 GAGAGCAGGGAGUCAGUGAAAGUGGUCAAGGAGCUGCUGGGAUAAUGAGAGAUUCUAGGAGAUGACAGUAGGGGCUCUGCUUCAGUGUGGCCCCUCCUGCAAGUGAAAACGAAAUCAAAU ..((((((((.((((.(((......))).....((.(((((((........))))))).)).))))....((((((..((....))..))))))))))))..((....))....)).... ( -38.30) >DroYak_CAF1 6028 120 - 1 GAGAGUAGGGAGUCAGUGAAAGUGGUCAAGGAGCUGCUGGGAUAAUGAGAGAUUCUAGGAGAUGACAGUAGGGGCUCUGCUUCAGUGUGGCCCCUCCUGCAAGUGAAAACGAAAUCAAAU ..((((((((.((((.(((......))).....((.(((((((........))))))).)).))))....((((((..((....))..))))))))))))..((....))....)).... ( -36.30) >consensus GAGAGUGGGGAGUCAGUGAAAGUGGUCAAGGAGCUGCUGGGAUAAUGAGAGAUUCUAGGAGAUGACAGUAGGGGCUCUGCUUCAGUGUGGCCCCUCCUGCAAGUGAAAACGAAAUCAAAU ..((((((((.((((..................((.(((((((........))))))).)).))))....((((((..((....))..))))))))))))..((....))....)).... (-34.35 = -33.71 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:07 2006