Locus 5243

Sequence ID 3R_DroMel_CAF1
Location 13,694,300 – 13,694,420
Length 120
Max. P 0.996669
window8556

overview

Window 6

Location 13,694,300 – 13,694,420
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.50
Mean single sequence MFE -52.76
Consensus MFE -50.46
Energy contribution -51.86
Covariance contribution 1.40
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.96
SVM decision value 2.73
SVM RNA-class probability 0.996669
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13694300 120 + 27905053
CGCCGUCGUGGGCAUCACCAUGGGCAGCAUGAAAAGGGGCCUCAGCAACACCUCGGUGGGGGUAAGUCUGCUCCACCUUUCCGAGUACGACGAACUUCCUCCGCCGCCGCCGGCCAACCU
.(((..(((((......)))))(((.((.......((((...........))))((((((((...((((((((.........))))).)))......)))))))))).))))))...... ( -46.60)
>DroSec_CAF1 4195 120 + 1
GGCCGUCGUGGGCAUCACCAUGGGCAGCAUGAAGAGGGGCGUCAGCAACACCUCAGUGGGGGUAAGUCUGCUCCACCUUUCCGAGUACGACGAACUUCCUCCGCCGCCGCCGGCCAACCA
((((..(((((......)))))(((.((.....((((.((....))....)))).(((((((...((((((((.........))))).)))......))))))).)).)))))))..... ( -51.50)
>DroSim_CAF1 4208 120 + 1
GGCCGUCGUGGGCAUCACCAUGGGCAGCAUGAAGAGGGGCGUCAGCAACACCUCGGUGGGGGUAAGUCUGCUCCACCUUUCCGAGUACGACGAACUUCCUCCGCCGCCGCCGGCCAACCA
((((..(((((......)))))(((.((.....((((.((....))....))))((((((((...((((((((.........))))).)))......)))))))))).)))))))..... ( -55.80)
>DroEre_CAF1 4387 120 + 1
GGCCGUCGUGGGCAUCACCAUGGGCAGCAUGAAGAGGGGCGUCAGCAACACCUCGGUGGGGGUUAGUCUGCUCCACCUCUCCGAGUACGACGAACUUCCUCCGCCGCCGCCGGCCAGCCA
((((..(((((......)))))(((.((.....((((.((....))....))))((((((((...((((((((.........))))).)))......)))))))))).)))))))..... ( -55.80)
>DroYak_CAF1 4425 120 + 1
GGCCGUCGUGGGCAUCACCAUGGGCAGCAUGAAGAGGGGCGUGAGCAACACCUCGGUGGGCGUUAGUCUGCUCCACCUUUCCGAGUACGACGAACUUCCUCCGCCGCCGCCGGCCAACCA
(((((.(((((......)))))(((.((.....((((.((....))....))))((.(((.(((.((((((((.........))))).))).))).))).)))).)))..)))))..... ( -54.10)
>consensus
GGCCGUCGUGGGCAUCACCAUGGGCAGCAUGAAGAGGGGCGUCAGCAACACCUCGGUGGGGGUAAGUCUGCUCCACCUUUCCGAGUACGACGAACUUCCUCCGCCGCCGCCGGCCAACCA
((((..(((((......)))))(((.((.....((((.((....))....))))((((((((...((((((((.........))))).)))......)))))))))).)))))))..... (-50.46 = -51.86 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:01 2006