Locus 5242

Sequence ID 3R_DroMel_CAF1
Location 13,693,960 – 13,694,061
Length 101
Max. P 0.649412
window8555

overview

Window 5

Location 13,693,960 – 13,694,061
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 88.59
Mean single sequence MFE -14.73
Consensus MFE -10.07
Energy contribution -10.40
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.69
Structure conservation index 0.68
SVM decision value 0.24
SVM RNA-class probability 0.649412
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13693960 101 - 27905053
CAAGAGAAUUUUUUAAAGUAUUCUCCCAUUGUCAGCUACAAAAAUGUACAAUAAAUUGUGUUCCUCACUAGAACACACUUACAUAUAAUAAAAAACCAAUU
...((((((..........))))))..(((((((..........)).)))))....(((((((.......)))))))........................ ( -13.50)
>DroSec_CAF1 3852 96 - 1
CAAGAGAAUAUUUUAAAGUAUUCUCCCAUUGUCCGCUACAGAAAUGU-----AAAACGUGCUCCUCCAUAGACCACACUUACAUAUAAUAAAAAAACAAUU
...(((((((((....)))))))))..(((((....((((....)))-----)....(((.((.......)).)))...................))))). ( -15.60)
>DroSim_CAF1 3865 96 - 1
CAAGAGAAUAUUUUAAAGUAUUCUCCCAUUGUCCGCUACAGAAAUGU-----AAAUUGUGCUCCUCCAAAGACCACACUUACAUAUAAUAAAAAAAAAAUU
...(((((((((....)))))))))..................((((-----((..((((.((.......)).)))).))))))................. ( -15.10)
>consensus
CAAGAGAAUAUUUUAAAGUAUUCUCCCAUUGUCCGCUACAGAAAUGU_____AAAUUGUGCUCCUCCAUAGACCACACUUACAUAUAAUAAAAAAACAAUU
...(((((((((....)))))))))..(((((.....(((....)))..........(((.((.......)).)))........)))))............ (-10.07 = -10.40 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:00 2006