Locus 524

Sequence ID 3R_DroMel_CAF1
Location 1,924,304 – 1,924,409
Length 105
Max. P 0.515542
window837

overview

Window 7

Location 1,924,304 – 1,924,409
Length 105
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 80.15
Mean single sequence MFE -28.68
Consensus MFE -9.88
Energy contribution -10.58
Covariance contribution 0.70
Combinations/Pair 1.20
Mean z-score -2.92
Structure conservation index 0.34
SVM decision value -0.04
SVM RNA-class probability 0.515542
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1924304 105 - 27905053
AAUCCAAAUACAGAUUAACCCACAUUCG---GACA---CCCGGCCCACAACAAUGUGGGCAAAUAUUUAAAUAUCAUUACGAUGUUGUCAGCGCAGC------GUAUGCAAAAACAG
.......((((.(((...........((---(...---.)))(((((((....)))))))............)))........(((((....)))))------)))).......... ( -22.80)
>DroPse_CAF1 68133 109 - 1
AAUUCAAACGCAGAUUAACCUACAUACG---GGGGGCUACAUGCCGACAACAGUGUAGGUAAAUAUUUAAAUAUCAUUACGAUGUUGUCUGCGGCGC-----UAUAUGCAAAAACUG
........(((((((..((((((((...---(..(((.....)))..)....)))))))).........((((((.....)))))))))))))..((-----.....))........ ( -32.60)
>DroGri_CAF1 84364 111 - 1
AAUUCAAACGCAGAUUAACCCACAUACGUUGUU-----GCAUGCCGGCAGCAAUGUAGGUAAAUAUUUAAAUAUCAUUAUGGCGCUACAA-CGGAGAGUACCUAUAUGCAAAAACUG
.........(((.(((.(((....(((((((((-----((......)))))))))))))).)))................((..((.(..-....)))..))....)))........ ( -22.90)
>DroYak_CAF1 88774 105 - 1
AAUCCAAAUACAGAUUAACCCACAUACG---GACA---GCAGGCCCACAACAAUGUGGGCAAAUAUUUAAAUAUCAUUACGAUGUUGUCGGCGCCGC------GUAUACAAAAACUG
.......................(((((---((((---((..(((((((....)))))))............(((.....)))))))))(....).)------)))).......... ( -24.90)
>DroAna_CAF1 69536 103 - 1
AAUUCAAACGCAGAUUAACCCACAUACG---GU-----GCAUGCCGGCAACAAUGUAGGUAAAUAUUUAAAUAUCAUUACGAUGUUGUCGGCGCGCC------GUAUGCAAAAACUG
......................((((((---((-----((..((((((((((.(((((....((((....))))..))))).)))))))))))))))------)))))......... ( -36.90)
>DroPer_CAF1 68558 109 - 1
AAUUCAAACGCAGAUUAACCUACAUACG---GGUGGCUACAUGCCGACAACAGUGUAGGUAAAUAUUUAAAUAUCAUUACGAUGUUGUCUGCGGCUC-----GAUAUGCAAAAACUG
........(((((((..((((((((...---.(((((.....))).))....)))))))).........((((((.....)))))))))))))((..-----.....))........ ( -32.00)
>consensus
AAUUCAAACGCAGAUUAACCCACAUACG___GA_____GCAUGCCGACAACAAUGUAGGUAAAUAUUUAAAUAUCAUUACGAUGUUGUCAGCGCCGC______AUAUGCAAAAACUG
........(((..(((.((((((((...........................)))))))).))).....((((((.....))))))....)))........................ ( -9.88 = -10.58 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:12 2006