Locus 5238

Sequence ID 3R_DroMel_CAF1
Location 13,691,597 – 13,691,717
Length 120
Max. P 0.668415
window8545

overview

Window 5

Location 13,691,597 – 13,691,717
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.67
Mean single sequence MFE -37.44
Consensus MFE -34.14
Energy contribution -34.46
Covariance contribution 0.32
Combinations/Pair 1.08
Mean z-score -1.21
Structure conservation index 0.91
SVM decision value 0.29
SVM RNA-class probability 0.668415
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13691597 120 + 27905053
UACAGAUCUACGCCGAGGCGAUGCCGGUUCAUCAGCCGGGACUCAUCCUGAAUGCAGUGGUCACUUUGGCUUUGUAUCUUUUGUCCACCGCUUUGGUGUUGGCCUCUUCGAUGGUCAUGU
.........(((((((((((....((((......))))((((.......((.(((((.((((.....)))))))))))....))))..)))))))))))(((((........)))))... ( -40.10)
>DroSec_CAF1 1509 120 + 1
UGCAGAUCUACGCCGAGGCCAUGCCGGUUCAUCAGCCGGGACUCAUCCUGAAUGCAGUGGUCACUUUGGCUUUGUAUCUUUUGUCCACCGCUUUGGUGUUGGCCUCUUCCAUGGUCAUGU
.(((.....((((((((((.....((((......))))((((.......((.(((((.((((.....)))))))))))....))))...))))))))))(((((........)))))))) ( -37.70)
>DroSim_CAF1 1513 120 + 1
UACAGAUCUACGCCGAGGCCAUGCCGGUUCAUCAGCCGGGACUCAUCCUGAAUGCAGUGGUCACUUUGGCUUUGUAUCUUUUGUCCACCACUUUGGUAUUGGCCUCUUCCAUGGUCAUGU
.(((((((......((((((((((((((......))).((((.......((.(((((.((((.....)))))))))))....))))........)))).)))))))......)))).))) ( -38.20)
>DroEre_CAF1 1484 120 + 1
UACAGAUCUACGCCGAGGCCAUGCCGGUUCAUCAGCCGGGGCUCAUCCUGAACGCAGUGGUCACUUUGGCAUUGUAUCUUUUGUCCACCACUCUGGUGCUGGCCUCUUCCAUGGUCAUGU
.(((((((......(((((((.((((((......))))((((((.....))..((((((.((.....)))))))).......))))(((.....))))))))))))......)))).))) ( -37.10)
>DroYak_CAF1 1486 120 + 1
UACAAAUCUACGCCGAGGCCAUGCCGGUUCAUCAGCCAGGACUCAUCCUGAAUGCAGUGGUCACUUUGGCUUUGUAUCUUUUGUCCACCUCUUUGGUGUUGGCCUCUUCCAUGGUCAUGU
.(((((..((((((((((((((((.(((......)))((((....))))....))).)))))...)))))...)))...))))).((((.....)))).(((((........)))))... ( -34.10)
>consensus
UACAGAUCUACGCCGAGGCCAUGCCGGUUCAUCAGCCGGGACUCAUCCUGAAUGCAGUGGUCACUUUGGCUUUGUAUCUUUUGUCCACCACUUUGGUGUUGGCCUCUUCCAUGGUCAUGU
.(((((((......((((((((((((((......))).((((.......((.(((((.((((.....)))))))))))....))))........)))).)))))))......)))).))) (-34.14 = -34.46 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:50 2006