Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,688,299 – 13,688,404 |
Length | 105 |
Max. P | 0.958563 |
Location | 13,688,299 – 13,688,404 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -34.34 |
Consensus MFE | -27.28 |
Energy contribution | -29.16 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.03 |
Mean z-score | -2.22 |
Structure conservation index | 0.79 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958563 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13688299 105 + 27905053 UUUACGAGCCACUUGCCGCUUCGCCAGCAUCGUCUUUGGCCAUUGCAAGAACGA---------------CAUAUUAUUAUGGCAGCCAUUGUUGUAAUUCCACAUCGGUUCGUGUUUCUU ..((((((((.(((((......(((((........)))))....)))))...((---------------......((((..((((...))))..))))......))))))))))...... ( -28.50) >DroSec_CAF1 15430 120 + 1 UUUACGAGCCACUUGCCGCUUCGCCAGCAUCGUCUUUGGCCAUUGCAACAACGACAACGGCAGAAGGGACAUAUUAUUAUGGCAGCCAUUGUUGUAAUUCCACAUCGGUUCGUGUUUCUU ..((((((((..((((((((.....)))...(((.(((..........))).)))...)))))..((((((((....))))(((((....)))))..)))).....))))))))...... ( -34.70) >DroSim_CAF1 15607 120 + 1 UUUACGAGCCACUUGCCGCUUCGCCAGCAUCGUCUUUGGCCAUUGCAACAACGACAACGGCAGAAGGGACAUAUUAUUAUGGCAGCCAUUGUUGUAAUUCCACAUCGGUUCGUGUUUCUU ..((((((((..((((((((.....)))...(((.(((..........))).)))...)))))..((((((((....))))(((((....)))))..)))).....))))))))...... ( -34.70) >DroEre_CAF1 10058 120 + 1 UUUACGAGCCACUUGCCGCUUCGCCAGCAUCGUCUUUGGCCAUUACAACAACGACAACGGCAGAAGGGACAUAUUAUUAUGGCAGCCAUUGUUGUAAUUCCACAUCGGUUCGUGUUUCUU ..((((((((..((((((((.....))).((((..(((.......)))..))))....)))))..((((((((....))))(((((....)))))..)))).....))))))))...... ( -35.10) >DroYak_CAF1 10296 120 + 1 UUUACGAGCCACUUGCCGCUUUGCCAGCAUCGUCUUUGGUCAUUACAACAAAGACAACGGCAGAAGGAACAUAUUAUUAUGGCAGCCAUUGUUGUUAUUCCACAUCGGUUCGUGUUUCUU ..((((((((..((((((((.....)))...(((((((..........)))))))...)))))..((((((((....))))(((((....)))))..)))).....))))))))...... ( -38.70) >consensus UUUACGAGCCACUUGCCGCUUCGCCAGCAUCGUCUUUGGCCAUUGCAACAACGACAACGGCAGAAGGGACAUAUUAUUAUGGCAGCCAUUGUUGUAAUUCCACAUCGGUUCGUGUUUCUU ..((((((((..((((((((.....))).((((..(((.......)))..))))....)))))..((((((((....))))(((((....)))))..)))).....))))))))...... (-27.28 = -29.16 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:49 2006