Locus 5235

Sequence ID 3R_DroMel_CAF1
Location 13,684,541 – 13,684,645
Length 104
Max. P 0.992686
window8541

overview

Window 1

Location 13,684,541 – 13,684,645
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 91.06
Mean single sequence MFE -28.98
Consensus MFE -23.92
Energy contribution -24.04
Covariance contribution 0.12
Combinations/Pair 1.18
Mean z-score -2.39
Structure conservation index 0.83
SVM decision value 2.34
SVM RNA-class probability 0.992686
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13684541 104 - 27905053
CAGCGAAUUUAAAUUGGCCUGCUCAUUUACCCUGCUCCGCGAUUUUCCCCCGAGAACAAUGGAAAUUACAGCCAAUUUCAGUUCGUUUUAAGGACAAUAAAUUG
.((((((((.((((((((..((...........))((((...(((((....)))))...)))).......)))))))).))))))))................. ( -22.60)
>DroSec_CAF1 11680 104 - 1
CAGCGAAUUUAAAUUGGCCUGCUCAUUUACACGGCUGCGGGAUUUUCCCCCGAGAAGAAUGAAAAUUGCAGCCAAUUUCAGUUCGUUUUAAGGACAAUAAAUUU
.((((((((.((((((((.(((((((((...(((....(((.....))))))....)))))).....))))))))))).))))))))................. ( -30.50)
>DroSim_CAF1 11810 104 - 1
CAGCGAAUUUAAAUUGGCCUGCUCAUUUACCCGGCUCCGGGAUUUUCCCCCGAGAAGAAUGAGAAUUGCAGCCAAUUUCAGUUCGUUUUAAGGACAAUAAAUUG
.((((((((.((((((((.(((((((((.((((....)))).(((((....))))))))))).....))))))))))).))))))))................. ( -33.60)
>DroEre_CAF1 6382 104 - 1
CAGCGAAUUUAAAUUGGCCUGCUCAUUUACCCUGCUCCGCGAUUUUCCCCCGAGAAAGAUGGAAAUUGCAGCCAAUUUCAGUUCGUUUAAAGGACAAUAAAUUG
.((((((((.((((((((..((...........))...(((((((.((..(......)..))))))))).)))))))).))))))))................. ( -26.60)
>DroYak_CAF1 6582 104 - 1
CAGCGAAUUUAAAUUGGCCUGCUCAUUUACCGUGCUCCGGGAUUUUCCCUCGAGAAGGAGGGAAAUCGCUGUCAAUUUCAGUUUGUUUAAGGAACAAUAAAUUG
.((((((((.((((((((..((.......(((.....)))(((((.(((((......)))))))))))).)))))))).))))))))................. ( -31.60)
>consensus
CAGCGAAUUUAAAUUGGCCUGCUCAUUUACCCUGCUCCGGGAUUUUCCCCCGAGAAGAAUGGAAAUUGCAGCCAAUUUCAGUUCGUUUUAAGGACAAUAAAUUG
.((((((((.((((((((.(((...(((......(((.(((......))).))).......)))...))))))))))).))))))))................. (-23.92 = -24.04 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:45 2006