Locus 523

Sequence ID 3R_DroMel_CAF1
Location 1,921,678 – 1,921,778
Length 100
Max. P 0.665048
window836

overview

Window 6

Location 1,921,678 – 1,921,778
Length 100
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 77.20
Mean single sequence MFE -33.38
Consensus MFE -16.39
Energy contribution -16.95
Covariance contribution 0.56
Combinations/Pair 1.32
Mean z-score -1.97
Structure conservation index 0.49
SVM decision value 0.28
SVM RNA-class probability 0.665048
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1921678 100 + 27905053
UAAGUCCAUGGUCAGGCCCCACGUGGG-----GCGCCAAAAGGGACCCUCGUUGGGCGCCAUAAAAGCAGGUGCAAAG--CGCCUGGGUAACCACAUGAAUGCAACA
...((((.((((...(((((....)))-----))))))....))))..(((((((..(((.......(((((((...)--)))))))))..))).))))........ ( -38.01)
>DroSec_CAF1 80007 100 + 1
UAAGUCCAUGGUCAGGCCCCACGUGGG-----GCGCCAAAAGGGACUCUCGUUGGGCGCCAUAAAAGCAGGUGCAAAG--CGCCUGGGAAACCACAUGAAUGCAACA
..(((((.((((...(((((....)))-----))))))....)))))...(((((((((.......((....))...)--))))(((....)))........)))). ( -38.90)
>DroSim_CAF1 80797 100 + 1
UAAGUCCAUGGUCAGGCCCCACGUGGG-----GCGCCAAAAGGGACUCUCGUUGGGCGCCAUAAAAGCAGGUGCAAAG--CGCCUGGGAAACCACAUGAAUGCAACA
..(((((.((((...(((((....)))-----))))))....)))))...(((((((((.......((....))...)--))))(((....)))........)))). ( -38.90)
>DroEre_CAF1 81853 100 + 1
UAAGUCCAUGGUCAGGUCCCACGUGGU-----CCGCCAAAAAGGACCCGCGUUGGGCGCCAUAAAAGCAGGUGCAAAU--CGCCUGGGAAACCACAUGAAUGCAACA
.......(((((...((((.(((((((-----((........))).)))))).)))))))))....(((((((.....--))))(((....)))......))).... ( -36.70)
>DroWil_CAF1 78545 89 + 1
------------CACGCCCAACUUAGU-----CAUCAAAAAGGUAUUGCAGGUAGAAGAGA-AUAAGCAGGGUUAAGGGUCAUUCGGGUAACCGCAGGAAGUCGGCA
------------...(((...((((..-----((((.....))).((((..((........-))..)))))..))))..((...(((....)))...))....))). ( -16.30)
>DroYak_CAF1 86187 105 + 1
UAAGUCCAUGGUCAGGCCCCCCAUGGUUAGGCCCCCCAAAAAGGACCCACGAUGGGCGCCAUAAAAUCAGGUGCAAAU--CGCCUGGGAAACCACAUGAAUGCAACA
......((((...((((...((((.((..((.((........)).)).)).))))(((((.........)))))....--.))))((....)).))))......... ( -31.50)
>consensus
UAAGUCCAUGGUCAGGCCCCACGUGGG_____CCGCCAAAAGGGACCCUCGUUGGGCGCCAUAAAAGCAGGUGCAAAG__CGCCUGGGAAACCACAUGAAUGCAACA
......((((....(((((((((.((....................)).)).)))).))).........((((.......))))(((....)))))))......... (-16.39 = -16.95 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:11 2006