Locus 5228

Sequence ID 3R_DroMel_CAF1
Location 13,677,021 – 13,677,135
Length 114
Max. P 0.606201
window8529

overview

Window 9

Location 13,677,021 – 13,677,135
Length 114
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 95.29
Mean single sequence MFE -25.87
Consensus MFE -21.02
Energy contribution -21.13
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.35
Structure conservation index 0.81
SVM decision value 0.15
SVM RNA-class probability 0.606201
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13677021 114 - 27905053
CCAAAUUGACGCGCCCAAAUUGGCAACAAUUUAAAUAAGAUUACAACUCCCAAAAAGGGGGAAUGAAGAGGUGGAUAAACUAUAAAUCAAUCCGCUGGGGGAAAUGGAGGAGAA
((..(((....(.(((((((((....))))))..............(((((.....)))))........(((((((.............)))))))))).).)))...)).... ( -28.12)
>DroEre_CAF1 45835 112 - 1
CCAAAUUGACACGCUCAAAUUGGCAACAAUUUAAAUAAGAUUACAACUCCCAAAAAG--GGAAUGAAGGGGUGGUUAAACUAUAAAUCAAUCCGCUGGGGGAAAUGGAGGAGAA
(((..(((((.(((((((((((....))))))...............((((.....)--)))......))))))))))............(((......)))..)))....... ( -26.10)
>DroYak_CAF1 43231 112 - 1
CCAAAUUGACGCGCUCAAAUUGGCAACAAUUUAAAUAAGAUUACAACUCCCAAAAAG--GGAAUAAAGAGGUAGUUAAACUAUAAAUCAAUCCGCUGGGGGAAAUGGAGGAGAA
(((..(((((((.(((((((((....))))))...............((((.....)--))).....))))).)))))............(((......)))..)))....... ( -23.40)
>consensus
CCAAAUUGACGCGCUCAAAUUGGCAACAAUUUAAAUAAGAUUACAACUCCCAAAAAG__GGAAUGAAGAGGUGGUUAAACUAUAAAUCAAUCCGCUGGGGGAAAUGGAGGAGAA
(((.............((((((....))))))..............((((((.......(((.(((....((((.....))))...))).)))..))))))...)))....... (-21.02 = -21.13 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:34 2006