Locus 5227

Sequence ID 3R_DroMel_CAF1
Location 13,676,352 – 13,676,452
Length 100
Max. P 0.611494
window8528

overview

Window 8

Location 13,676,352 – 13,676,452
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 95.33
Mean single sequence MFE -25.97
Consensus MFE -22.72
Energy contribution -23.83
Covariance contribution 1.11
Combinations/Pair 1.03
Mean z-score -1.96
Structure conservation index 0.87
SVM decision value 0.16
SVM RNA-class probability 0.611494
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13676352 100 + 27905053
AUGUUAACGGCUCUACACGUGUUAGAAUCAACUGCAACACGCAAAGCUGCAAAUAGUUUACCUGCCUCACAGUUAACAAGCUGCAGUAAGUGCAGUGAGA
.((((((((((......((((((((......)))..)))))..((((((....))))))....))).....))))))).((((((.....)))))).... ( -23.70)
>DroEre_CAF1 45171 100 + 1
AUGUUAACGGCUCUACACGUGUUAGAUUCAACUGCAACACGCAAAGCUGCAAAUAGUUUACCUGACUUACAGUUAGUAAACUGCAGUAAGUGCAGUGAGA
...........(((.((((((((((......)))..))))(((..((((((....((((((.((((.....))))))))))))))))...))).)))))) ( -27.20)
>DroYak_CAF1 42563 100 + 1
AUGUUAACGGCUCUACACGUGUAAGAUUCAACUGCAACACGCAAAGCUGCAAAUAGUUUACCUGACUUACAGUUAGUAAACUGCAGUAAGUGCAGUGAGA
...........(((.(((((((.((......))...))))(((..((((((....((((((.((((.....))))))))))))))))...))).)))))) ( -27.00)
>consensus
AUGUUAACGGCUCUACACGUGUUAGAUUCAACUGCAACACGCAAAGCUGCAAAUAGUUUACCUGACUUACAGUUAGUAAACUGCAGUAAGUGCAGUGAGA
...........(((.((((((((((......)))..))))(((..((((((....((((((.((((.....))))))))))))))))...))).)))))) (-22.72 = -23.83 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:33 2006