Locus 5226

Sequence ID 3R_DroMel_CAF1
Location 13,675,391 – 13,675,489
Length 98
Max. P 0.997267
window8527

overview

Window 7

Location 13,675,391 – 13,675,489
Length 98
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 78.31
Mean single sequence MFE -19.67
Consensus MFE -12.44
Energy contribution -13.33
Covariance contribution 0.89
Combinations/Pair 1.04
Mean z-score -3.00
Structure conservation index 0.63
SVM decision value 2.83
SVM RNA-class probability 0.997267
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13675391 98 - 27905053
CGCAAAAGUCAUAAAUGCAGAUGUUUACAUUUCUUUUCUC------------CCACUCCCAGCCCCUUGUCUUCACUUGGUUCCUUUGGGGCAUUUUCUUUGUCUUUUG-------C
.(((((((.((.(((((((((((....))))).......(------------(((.....((((...((....))...))))....))))))))))....)).))))))-------) ( -24.40)
>DroEre_CAF1 44173 98 - 1
CGCAAAAGUCAUAAAUGCAGAUGUUUACAUUUCUUUGCUC------------CCACUACCAACUCCUUGUCCUCACUUGCUUCCUUUGGGCCAUUUUCUUUGUCUUUUG-------C
.(((((((.((.(((((.(((((....)))))........------------................((((...............)))))))))....)).))))))-------) ( -15.66)
>DroYak_CAF1 41569 107 - 1
CGCAAAAGUCAUAAAUGCAGAUGUUUACAUUUCUUUUCUCCCCUCUCCUCUCCCACUCCCACCUCC----------UUGCUUCCUUUGGGGCAUUUUCUUUGUCUUUUGUUUUGAGC
.(((((((.((.(((((((((((....))))).........................((((.....----------..........))))))))))....)).)))))))....... ( -18.96)
>consensus
CGCAAAAGUCAUAAAUGCAGAUGUUUACAUUUCUUUUCUC____________CCACUCCCAACUCCUUGUC_UCACUUGCUUCCUUUGGGGCAUUUUCUUUGUCUUUUG_______C
..((((((.((.(((((((((((....))))).........................(((((.......................)))))))))))....)).))))))........ (-12.44 = -13.33 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:32 2006