Locus 5225

Sequence ID 3R_DroMel_CAF1
Location 13,675,192 – 13,675,305
Length 113
Max. P 0.602709
window8526

overview

Window 6

Location 13,675,192 – 13,675,305
Length 113
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 94.10
Mean single sequence MFE -38.83
Consensus MFE -37.53
Energy contribution -37.53
Covariance contribution 0.01
Combinations/Pair 1.09
Mean z-score -1.47
Structure conservation index 0.97
SVM decision value 0.14
SVM RNA-class probability 0.602709
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13675192 113 - 27905053
GAUAGACCAAGAACUUUUGCCCCUGUCCUUGGGGCAAUUUGUCGCGUUCGCACGACUUUUACGCAGAUGAAACAGCCACUUUAUGGGCGUCGACGGGAGUGUGGAUACACAGA
................(((((((.......)))))))(((((.(..(((((((..((.((((((..(((((........)))))..)))).)).))..)))))))..)))))) ( -35.90)
>DroEre_CAF1 43952 112 - 1
GAUAGACCAAGAACU-UUGCCCCUGUCCUUGGGGCAAUUUGUCGCGUUCGCACGACUUUUACGCAGAUGAAACAGCCACUUUAUGGGCGCUGAGAGGGGUGUGAGUACACAGU
((((((.........-(((((((.......)))))))))))))(..(((((((..(((((((((..(((((........)))))..))).))))))..)))))))..)..... ( -38.90)
>DroYak_CAF1 41368 113 - 1
GAUAGACCAAGAACUUUUGCCCCUGUCCUUGGGGCAAUUUGUCGCGUUCGCACGACUUUUACGCAGAUGAAGCAGCCACUUUAUGGGCGCUGAGAGGGGUGUGAGUACACAGU
((((((..........(((((((.......)))))))))))))(..(((((((..(((((((((..((((((......))))))..))).))))))..)))))))..)..... ( -41.70)
>consensus
GAUAGACCAAGAACUUUUGCCCCUGUCCUUGGGGCAAUUUGUCGCGUUCGCACGACUUUUACGCAGAUGAAACAGCCACUUUAUGGGCGCUGAGAGGGGUGUGAGUACACAGU
((((((..........(((((((.......)))))))))))))(..(((((((..(((((((((..(((((........)))))..))).))))))..)))))))..)..... (-37.53 = -37.53 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:32 2006