Locus 5223

Sequence ID 3R_DroMel_CAF1
Location 13,673,084 – 13,673,179
Length 95
Max. P 0.784880
window8523

overview

Window 3

Location 13,673,084 – 13,673,179
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 78.89
Mean single sequence MFE -14.20
Consensus MFE -11.21
Energy contribution -11.10
Covariance contribution -0.11
Combinations/Pair 1.12
Mean z-score -1.50
Structure conservation index 0.79
SVM decision value 0.57
SVM RNA-class probability 0.784880
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13673084 95 - 27905053
GUCUGCAUGUAAAUUAUCGCAUCGAGUGGGCGCGCUCACUGCACCAACCACCCACUUACCACCCCAAAACCAAACCACCCACCAACAACAAAAAA
...((((((.....))).)))..(((((((.(.((.....))......).)))))))...................................... ( -11.90)
>DroEre_CAF1 41894 80 - 1
GUCUGCAUGUAAAUUAUCGCAUCGAGUGGGCGCGCUCACUGCACC----ACCCAUUCGCCACCAAAAAAACAAAA--CCCACCAUC---------
...((((((.....))).))).((((((((.(.((.....))..)----.)))))))).................--.........--------- ( -15.60)
>DroYak_CAF1 39318 76 - 1
GUCUGCAUGUAAAUUAUCGCAUCGAGUGGGCGCGCUCACUGCACC----ACCCAUGCACCACCCAAAAAGCAAAC------CCAUC---------
((.(((..(........)((((.(.((((..(((.....))).))----))).))))............))).))------.....--------- ( -15.10)
>consensus
GUCUGCAUGUAAAUUAUCGCAUCGAGUGGGCGCGCUCACUGCACC____ACCCAUUCACCACCCAAAAAACAAAC__CCCACCAUC_________
...((((((.....))).)))..(((((((.(.((.....)).)......)))))))...................................... (-11.21 = -11.10 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:29 2006