| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,669,986 – 13,670,187 |
| Length | 201 |
| Max. P | 0.801789 |
| Location | 13,669,986 – 13,670,087 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.76 |
| Mean single sequence MFE | -34.13 |
| Consensus MFE | -22.75 |
| Energy contribution | -24.06 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.734564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13669986 101 + 27905053 C---CCGUUAGCUGCCUUUGUC--------UGUCGGUGG-GUCCUGCUUGUGGCAUUCUCGUGUCAUAAUCUCUGACAACUAUCGGCAUUCAUGUGGCAGCCAGCUGAACUAA .---..(((.((((((..((..--------(((((((((-(((..(.(((((((((....))))))))).)...)))..)))))))))..))...)))))).)))........ ( -38.50) >DroSec_CAF1 35149 101 + 1 C---CAAGCAGCUGUCUUUGUC--------UGUCGGUGG-GUCCUGCUUGUGGCAUUCUCGUGUCAUAAUCUCUGACAACUAUCGGCAUUCAUGUGGCAGCCAGCUGAACUAA .---..(((.((((((..((..--------(((((((((-(((..(.(((((((((....))))))))).)...)))..)))))))))..))...))))))..)))....... ( -36.20) >DroSim_CAF1 35158 101 + 1 C---CAGGCAGCUGUCUUUGUC--------UGUCGGUGG-GUCCUGCUUGUGGCAUUCUCGUGUCAUAAUCUCUGACAACUAUCGGCAUUCAUGUGGCAGCCAGCUGAACUAA .---..(((.((((((..((..--------(((((((((-(((..(.(((((((((....))))))))).)...)))..)))))))))..))...))))))..)))....... ( -36.20) >DroEre_CAF1 38969 101 + 1 C---CAGGCAGCUGUCUUUGUC--------UGUCGGUGG-GUCCUGCUUGUGGCAUUCUCGUGUCAUAAUCUCUGACAACUAUCGGCAUUCUUGUGGCAGCCAGCUGAACUAA .---..(((.((((((...(..--------(((((((((-(((..(.(((((((((....))))))))).)...)))..)))))))))..)....))))))..)))....... ( -34.40) >DroMoj_CAF1 42841 93 + 1 A---CAGCUCGUGGCC-----C--------UUUCGGCAGCGCUUUGCUGGCG--GUGCUCGUGUUAUAAUCUUUGACAACUAUCGGCAUACAUGUGGCAGGCAGGCAGG--GG .---..((..((.(((-----.--------...((.((((.....)))).))--(((((..(((((.......)))))......)))))......)))..))..))...--.. ( -26.00) >DroAna_CAF1 30878 112 + 1 CCUGCAGCCAGCUGUCUCUGUCUAUCCGCCUGUCGAUGG-GUCCUGCUUGUGGCAUUCUCGUGUCAUAAUCCCUGACAACUAUCGGCAUUCACGUGGCAACCAGCUGAACCAG .(((....((((((....((((........(((((((((-(((..(.(((((((((....))))))))).)...)))..))))))))).......))))..))))))...))) ( -33.46) >consensus C___CAGGCAGCUGUCUUUGUC________UGUCGGUGG_GUCCUGCUUGUGGCAUUCUCGUGUCAUAAUCUCUGACAACUAUCGGCAUUCAUGUGGCAGCCAGCUGAACUAA ........((((((...(((((........(((((((((..((..(.(((((((((....))))))))).)...))...))))))))).......))))).))))))...... (-22.75 = -24.06 + 1.31)
| Location | 13,670,087 – 13,670,187 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 95.90 |
| Mean single sequence MFE | -15.45 |
| Consensus MFE | -13.42 |
| Energy contribution | -13.82 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.801789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13670087 100 + 27905053 CCCCUUGUCCCCAUCCUAUUUCCCUCUACGCCCCUGACAAUCCUCUUUGCUAACCAAACGCACUUGGCAUCCGCAUCUGCAUGCCAUUUGAUUUGCUGAC ....(((((..........................)))))..............((((..((..((((((..((....))))))))..)).))))..... ( -12.27) >DroSec_CAF1 35250 100 + 1 CCCCUUGUCCCCAUCCGUUUUCCCACUACGCCCCUGACAAUCCUCUUUGCUAACCAAACGCACUUGGCAUCCGCAUCUGCAUGCCAUUUGAUUUGCUGAC ....(((((......(((.........))).....)))))..............((((..((..((((((..((....))))))))..)).))))..... ( -14.90) >DroSim_CAF1 35259 100 + 1 CCCCUUGUCCCCAUCCGUUUUCCCUCUACGCCCCUGACAAUCCUCUUUGCUAACCAAACGCACUUGGCAUCCGCAUCUGCAUGCCAUUUGAUUUGCUGAC ....(((((......(((.........))).....)))))..............((((..((..((((((..((....))))))))..)).))))..... ( -14.90) >DroEre_CAF1 39070 99 + 1 CCCCUUGUCCCUAUCCGUUUUCCC-CUACGCCCCUGACAAUCCUCUUUGCAAACCAAACGCACUUGGCAUCCGCAUCUGCAUGCCAUUUGAUUUGCUGAC ....(((((......(((......-..))).....)))))........(((((.((((......((((((..((....)))))))))))).))))).... ( -18.70) >DroYak_CAF1 36375 100 + 1 CCCCUUGUCCCUCUACGUUUUCCCUCUACGCCCCUGACAAUCCUCUUUGCUAACCAAACGCACUUGGCAUCCGCAUCUGCAUGCCAUUUGAUUUGCUGCU ....(((((......(((.........))).....)))))........((....((((..((..((((((..((....))))))))..)).))))..)). ( -16.50) >consensus CCCCUUGUCCCCAUCCGUUUUCCCUCUACGCCCCUGACAAUCCUCUUUGCUAACCAAACGCACUUGGCAUCCGCAUCUGCAUGCCAUUUGAUUUGCUGAC ....(((((......(((.........))).....)))))..............((((..((..((((((..((....))))))))..)).))))..... (-13.42 = -13.82 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:25 2006