Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,665,794 – 13,665,894 |
Length | 100 |
Max. P | 0.572709 |
Location | 13,665,794 – 13,665,894 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 87.20 |
Mean single sequence MFE | -29.30 |
Consensus MFE | -17.47 |
Energy contribution | -17.71 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.81 |
Structure conservation index | 0.60 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13665794 100 + 27905053 ACUGUGUGGAAGUGUGUGUGUGCAUUUGAAAGUAGCACA----UGGGUGCCAAAACACAGAGAGGCGCACAGGGAUAUCAGGACAACACAUGCCAUUGAAGGCA ..(((((.((.((.(.(((((((.((((......((((.----...)))).......))))...))))))).).)).))......)))))((((......)))) ( -29.92) >DroSec_CAF1 30937 98 + 1 ACUGUAAAUGUGUGUGUGUGUGCAUUUGAAAGGAGCACA----UGGGUGCCAAAAC--AGAGAGGCGCACAGGGAUAUCAGGACAACACAUGCCAUUGAAGGCA ..(((...(((((.(.(((((((.((((....(.((((.----...)))))....)--)))...))))))).).))).))..))).....((((......)))) ( -29.90) >DroSim_CAF1 30961 96 + 1 ACUGUAAAUGUGUG--UGUGUGCAUUUGAAAGGAGCACA----UGGGUGCCAAAAC--AGAGAGGCACACAGGGAUAUCAGGACAACACAUGCCAUUGAAGGCA .(((...((((.(.--(((((((.((((....(.((((.----...)))))....)--)))...))))))).).))))))).........((((......)))) ( -30.00) >DroEre_CAF1 34809 88 + 1 ACUGU----------GUGUGUGCAUUUGAAAGGAGCACA----UUGGUGACAAAAC--AGAGAGGCGCACAGGGAUAUCAGGACAACACAUGCCAUUGAAGGCA .((((----------((((((((.(((....))))))).----(((....)))...--......))))))))..................((((......)))) ( -27.50) >DroYak_CAF1 31128 92 + 1 ACUGU----------GUGUGUGCAUUUGAAAGGAGCACAUACAUAGGUGCUAAAAC--AGAGAGGCGCACAGGGAUAUCAGGACAACACAUGCCAUUGAAGCCA .((((----------((((((((.(((....)))))))))))))))(((((.....--.....)))))....((...(((((.((.....))))..)))..)). ( -29.20) >consensus ACUGU______GUG_GUGUGUGCAUUUGAAAGGAGCACA____UGGGUGCCAAAAC__AGAGAGGCGCACAGGGAUAUCAGGACAACACAUGCCAUUGAAGGCA ..(((...........(((((((.(((.......((((........))))........)))...)))))))...........))).....((((......)))) (-17.47 = -17.71 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:23 2006