Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,916,975 – 1,917,095 |
Length | 120 |
Max. P | 0.868621 |
Location | 1,916,975 – 1,917,095 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.92 |
Mean single sequence MFE | -24.25 |
Consensus MFE | -19.31 |
Energy contribution | -20.50 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.06 |
Mean z-score | -1.38 |
Structure conservation index | 0.80 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1916975 120 + 27905053 AAACCAACAGCUGGUCCUUGGAACCAAAACUUUAAAAUGGGUUUGGCAAUUACGAAUCAAAUUACAAAAGUUGUAAAUUUAAAAUAGGUUCGUGUAUUUCGACUUCAAGGUAAACAAAUG ..((((.....))))(((((((.(((((.(((......))))))))....((((((((((((((((.....))).)))))......)))))))).........))))))).......... ( -22.10) >DroSec_CAF1 75375 120 + 1 AAGCCAACAGCUGGUCCUUGGAACCAAAACUUUAAAAUAGGUUUGGCAAUUACGAAUCAAAUUACCAAAGUUUUAAAUUUUAAAGAGGUUCGUGUAUUUUGACUUCAAGGAAAACAACUG .......(((.((.(((((((((((....(((((((((((.(((((.((((........)))).))))).))....))))))))).)))))((........))..))))))...)).))) ( -27.40) >DroSim_CAF1 76151 120 + 1 AAGCCAACAGCUGGUCCUUGGAACCAAAACUUUAAAAUAGGUUUGGCAAUUACGAAUCAAAUUACCAAAGUUUUAAAUUUUAAAGAGGUUCGUGUAUUUUGACUUCAAGGAAAACAAGUG .........((((.(((((((((((....(((((((((((.(((((.((((........)))).))))).))....))))))))).)))))((........))..))))))...).))). ( -25.10) >DroEre_CAF1 77329 109 + 1 AAGCCAACAUCUGGUGCUUGGCACCGAAACUUUAAAAUAGGUUUGGCAAUUACGAAUCAAAUUACCAAAGUUGUAAAUUUGAAUGAGGUGCGUAUAUUUCGACUACAAG----------- ..((((.....)))).(((((((((.....((((((((((.(((((.((((........)))).))))).))))...))))))...)))))((........))..))))----------- ( -22.40) >consensus AAGCCAACAGCUGGUCCUUGGAACCAAAACUUUAAAAUAGGUUUGGCAAUUACGAAUCAAAUUACCAAAGUUGUAAAUUUUAAAGAGGUUCGUGUAUUUCGACUUCAAGGAAAACAA_UG ..((((.....))))((((((((((....(((((((((.((((((.......))))))...((((.......))))))))))))).)))))((........))..))))).......... (-19.31 = -20.50 + 1.19)
Location | 1,916,975 – 1,917,095 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.92 |
Mean single sequence MFE | -25.68 |
Consensus MFE | -20.17 |
Energy contribution | -21.30 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.03 |
Mean z-score | -2.01 |
Structure conservation index | 0.79 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868621 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1916975 120 - 27905053 CAUUUGUUUACCUUGAAGUCGAAAUACACGAACCUAUUUUAAAUUUACAACUUUUGUAAUUUGAUUCGUAAUUGCCAAACCCAUUUUAAAGUUUUGGUUCCAAGGACCAGCUGUUGGUUU ..........(((((..((......))..(((((.((((((((........(((.((((((........)))))).))).....))))))))...))))))))))(((((...))))).. ( -19.62) >DroSec_CAF1 75375 120 - 1 CAGUUGUUUUCCUUGAAGUCAAAAUACACGAACCUCUUUAAAAUUUAAAACUUUGGUAAUUUGAUUCGUAAUUGCCAAACCUAUUUUAAAGUUUUGGUUCCAAGGACCAGCUGUUGGCUU ((((((...((((((..((......))..(((((.(((((((((.......((((((((((........))))))))))...)))))))))....))))))))))).))))))....... ( -33.50) >DroSim_CAF1 76151 120 - 1 CACUUGUUUUCCUUGAAGUCAAAAUACACGAACCUCUUUAAAAUUUAAAACUUUGGUAAUUUGAUUCGUAAUUGCCAAACCUAUUUUAAAGUUUUGGUUCCAAGGACCAGCUGUUGGCUU .........((((((..((......))..(((((.(((((((((.......((((((((((........))))))))))...)))))))))....)))))))))))..(((.....))). ( -28.70) >DroEre_CAF1 77329 109 - 1 -----------CUUGUAGUCGAAAUAUACGCACCUCAUUCAAAUUUACAACUUUGGUAAUUUGAUUCGUAAUUGCCAAACCUAUUUUAAAGUUUCGGUGCCAAGCACCAGAUGUUGGCUU -----------..((..((((.......)).))..))..........((((((((((((((........))))))))))...........((((.(((((...))))))))))))).... ( -20.90) >consensus CA_UUGUUUUCCUUGAAGUCAAAAUACACGAACCUCUUUAAAAUUUAAAACUUUGGUAAUUUGAUUCGUAAUUGCCAAACCUAUUUUAAAGUUUUGGUUCCAAGGACCAGCUGUUGGCUU ..........(((((..((........))(((((.(((((((((.......((((((((((........))))))))))...)))))))))....)))))))))).((((...))))... (-20.17 = -21.30 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:10 2006