| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,659,756 – 13,659,847 |
| Length | 91 |
| Max. P | 0.551103 |
| Location | 13,659,756 – 13,659,847 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 87.35 |
| Mean single sequence MFE | -27.35 |
| Consensus MFE | -18.93 |
| Energy contribution | -19.52 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.38 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.551103 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13659756 91 - 27905053 UCUUAAUGUGUUUACGUGCCUGCGAGAAUAUCUAUAGCAUACUUAUCCGGGUUUU--CGUUCAUAGAGAACCCAGGCACGUCCUU-------UCUCGCCA .......(((...((((((((((.((.....))...))..........(((((((--(.......))))))))))))))))....-------...))).. ( -28.60) >DroSec_CAF1 24911 91 - 1 UCUUAAUCUGUUUACGUGCCUGCGAGAAUAUCUAUAGCAUACUUAUCCGGGUUCU--CGUUCAUAGAGAACCCAGGCACGUCCUU-------UCUCGCCA .............((((((((((.((.....))...))..........(((((((--(.......))))))))))))))))....-------........ ( -30.80) >DroSim_CAF1 24777 91 - 1 UCUUAAUGUGUUUACGUGCCUGCGAGAAUAUCUAUAGCAUACUUAUCCGGGUUCU--CGUUCAUAGAGAACCCAGGCACGUCCUU-------UCUCGCCA .......(((...((((((((((.((.....))...))..........(((((((--(.......))))))))))))))))....-------...))).. ( -31.20) >DroEre_CAF1 28801 90 - 1 UCUUAAUGUGUUUACGUGCCUGCGAGAAUCUCUAUAGCAUACUUAUCCGGGUUCU--CGUUCAUAGAGAACCCAGGCACGUCCUU-------CUUCGCC- .......(((...((((((((((.((.....))...))..........(((((((--(.......))))))))))))))))....-------...))).- ( -31.20) >DroYak_CAF1 25217 90 - 1 UCUUAAUGUGUUUACGUGCCUACGAGAAUCUCUAUGGCAUACUUAUCUGGGUUCU--CGUUCAUAGAGAACACAGGCACGUCCUU-------UUUUGCC- .............((((((((..((((((((..((((.....))))..)))))))--)((((.....))))..))))))))....-------.......- ( -26.60) >DroAna_CAF1 20532 99 - 1 CUUUAAUGCCAUUACGUGCCUGCCAGCAUUUCUAUAGCAUACUUAUCCGGGGUCUCCCGUUCAUAGAAAACCUAGACACGUUCCUGCCUCUAUCUCGCC- .......((....(((((.(((......(((((((((....))....((((....))))...)))))))...))).)))))....))............- ( -15.70) >consensus UCUUAAUGUGUUUACGUGCCUGCGAGAAUAUCUAUAGCAUACUUAUCCGGGUUCU__CGUUCAUAGAGAACCCAGGCACGUCCUU_______UCUCGCC_ .............((((((((((.((.....))...))..........(((((((...........)))))))))))))))................... (-18.93 = -19.52 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:14 2006