Locus 5215

Sequence ID 3R_DroMel_CAF1
Location 13,656,656 – 13,656,765
Length 109
Max. P 0.740931
window8506

overview

Window 6

Location 13,656,656 – 13,656,765
Length 109
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 81.72
Mean single sequence MFE -18.95
Consensus MFE -12.37
Energy contribution -12.90
Covariance contribution 0.53
Combinations/Pair 1.08
Mean z-score -2.04
Structure conservation index 0.65
SVM decision value 0.45
SVM RNA-class probability 0.740931
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13656656 109 - 27905053
UACGCAGGACACACCUCCCCCAAAAGAAAAAAAAAAUAUCAUGCCUUACCUACACUCCCGUGAACUCUGGAAUGUCCUGUGACUAGGCAAACGCAUUCAAACAUCAAUA
..(((((((((..((((........)).........................(((....)))......))..))))))))).....((....))............... ( -18.60)
>DroSec_CAF1 21695 107 - 1
UACGCAGGACACACCUCCCCCAAAAGCAAA--AAAAUAUCAUGCCUCACCAGCACUCCCUUGAACUCUGGAAUGUCCUGUGACUAGGCGAACGCAUUCAAACAUCAAUA
..(((((((((..............(((..--.........)))....((((...((....))...))))..))))))))).....((....))............... ( -21.10)
>DroSim_CAF1 21539 108 - 1
UACGCAGGACACACCUCCCCCAAAAGCAAA-AAAAAUAUCAUGCCUCACCAGCACUCCCGUGAACUCUGGAAUGUCCUGUGACUAGGCGAACGCAUUCAAACAUCAAUA
..(((((((((..............(((..-..........)))....(((((((....)))....))))..))))))))).....((....))............... ( -22.60)
>DroEre_CAF1 25573 97 - 1
UACGCAGGACACACCUCCCCCA-----AA--AAAAAUAUCAUACCUCACCAGCAC-----UGAACUCUGGAAUGUCCUGUGACUAGGCAAACGCAUUCAAACAUCAAUA
..(((((((((..((.......-----..--........................-----........))..))))))))).....((....))............... ( -16.08)
>DroYak_CAF1 22046 103 - 1
UACGCAGGACACACCUCCCGCAC----AA--AAAAAUAUCUUGCCUCACCAGCACUCCCGUGAACUCUGGAAUGUCCUGUGACUAGGCAAACGCAUUCAAACAUCAAUA
..(((((((((........(((.----..--..........)))....(((((((....)))....))))..))))))))).....((....))............... ( -22.02)
>DroAna_CAF1 17182 86 - 1
UACGCAGGACACACCCCCGC--------------------AGGACUCACC---CUUCCCCGGUACUUCGACAUGCCUCCUGACUAGGCAAACGCAUUCAAACAUCAAUA
...((.(((...(((...(.--------------------(((......)---)).)...)))..)))....(((((.......)))))...))............... ( -13.30)
>consensus
UACGCAGGACACACCUCCCCCAA____AA__AAAAAUAUCAUGCCUCACCAGCACUCCCGUGAACUCUGGAAUGUCCUGUGACUAGGCAAACGCAUUCAAACAUCAAUA
..(((((((((..((.....................................................))..))))))))).....((....))............... (-12.37 = -12.90 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:13 2006