| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,652,986 – 13,653,079 |
| Length | 93 |
| Max. P | 0.531352 |
| Location | 13,652,986 – 13,653,079 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 88.73 |
| Mean single sequence MFE | -25.23 |
| Consensus MFE | -19.41 |
| Energy contribution | -18.53 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13652986 93 - 27905053 GUGUGUAUAGUCAGUCGGAAACUAAAGUUUUUCUUUUAUCUGCUUCUGGGCUGCUUUCA-AGGGGGGUUCAGAUGGAAGGGAAAUAGAGACAGA .............((((....)....((((..((((((((((......((((.(((...-.))).))))))))))))))..))))...)))... ( -24.60) >DroEre_CAF1 17581 87 - 1 GUGUGUAUAG----UCGGAAACUAAAGUUUUUCUUUUAUCUGCUUCUGGGCUGUUUUCGG---GGGGUUCAGACGGAAGGGAAAUAGAGACAGA .........(----(((....)....((((..((((..((((((((((((.....)))))---)))...))))..))))..))))...)))... ( -24.50) >DroYak_CAF1 17995 87 - 1 GUGUGUAUAG----UCGGAAACUAAAGUUUUUAUUUUAUCUGCUUCUGGGCUGUUUUCGA---GGGGCUCAGACAGACGGGAAAUAGAGACAGA ..........----..(....)....(((((((((((.((((..((((((((.((....)---).))))))))))))...)))))))))))... ( -26.60) >consensus GUGUGUAUAG____UCGGAAACUAAAGUUUUUCUUUUAUCUGCUUCUGGGCUGUUUUCG____GGGGUUCAGACGGAAGGGAAAUAGAGACAGA ................(....)....((((((.((((.((((..((((((((.(.........).))))))))))))...)))).))))))... (-19.41 = -18.53 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:10 2006