Locus 5212

Sequence ID 3R_DroMel_CAF1
Location 13,649,060 – 13,649,169
Length 109
Max. P 0.701656
window8502

overview

Window 2

Location 13,649,060 – 13,649,169
Length 109
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 72.88
Mean single sequence MFE -27.16
Consensus MFE -12.63
Energy contribution -13.15
Covariance contribution 0.52
Combinations/Pair 1.22
Mean z-score -1.79
Structure conservation index 0.47
SVM decision value 0.35
SVM RNA-class probability 0.701656
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13649060 109 + 27905053
AAGUAAUUUAAUCCGCUUGGCUCCAUUG----GGCUUUGAGUUCUAAUACGCACUGUAUUUGUGCAUCCGGUGCGCUGAUGUACAUGAAGUACAUAAUGUGGGUAAAUGGAAU
...........((((((((((((....)----))))..)))).....(((.(((((((((((((((((.((....))))))))))...))))))....))).)))...))).. ( -28.80)
>DroSec_CAF1 14153 109 + 1
AAGUAAUUUGAUCCGCUUGGCCCCAUUG----GGCUUUGAGUUCUAUUACGCACUGUAUUUGUGCAUCCGGUGCGCUGAUGUACAUGAAGUACAUAAUGUGGGUAAAUGGAAU
...........((((((((((((....)----))))..))))....((((.(((((((((((((((((.((....))))))))))...))))))....))).))))..))).. ( -32.70)
>DroSim_CAF1 13869 109 + 1
AAGUAAUUUAAUCCGCUUGGUCCCAUUG----GGCUUUGAGUUCUAAUACGCACUGUAUUUGUGCAUCCGGUGCGCUGAUGUACAUGAAGUACAUAAUGUGGGUAAAUGGAAU
...........((((((((((((....)----))))..)))).....(((.(((((((((((((((((.((....))))))))))...))))))....))).)))...))).. ( -29.10)
>DroEre_CAF1 13568 91 + 1
AAGUAAUUUGAUCCGUUUGCCCUCAUUU----A------------------UUUUGUAUUUGUGCAUUCGGGGUGCUGAUGUACAUAAAGUACAUAAUGUGUGUAAGCGAAAU
.............(((((((.(.((((.----.------------------...(((((((((((((.(((....))))))))))...)))))).)))).).))))))).... ( -23.50)
>DroAna_CAF1 10115 92 + 1
AAGUAAUUCGAUACGAUU----CCAUUUAAGAGACUUCCAAUUCUAAAACCCACUGUAUUUAUG---------------UGUAUAUAGAAUACAU--CGUGGGUAAAUGGAAU
..(((......))).(((----((((((.((((........))))...((((((((((((((((---------------....))).))))))).--.))))))))))))))) ( -21.70)
>consensus
AAGUAAUUUGAUCCGCUUGGCCCCAUUG____GGCUUUGAGUUCUAAUACGCACUGUAUUUGUGCAUCCGGUGCGCUGAUGUACAUGAAGUACAUAAUGUGGGUAAAUGGAAU
......................(((((....................(((.((((((((((((((((.(((....))))))))))...))))))....))).))))))))... (-12.63 = -13.15 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:09 2006