Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,914,913 – 1,915,017 |
Length | 104 |
Max. P | 0.545968 |
Location | 1,914,913 – 1,915,017 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.15 |
Mean single sequence MFE | -22.53 |
Consensus MFE | -2.27 |
Energy contribution | -2.95 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.11 |
Mean z-score | -1.47 |
Structure conservation index | 0.10 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1914913 104 + 27905053 AGUGCAUACUUUACUUUUUAUGCCUG---UAAUAUGUGUG--UGCUUGUGUAUCUCUGUAUUUGCACUGUUAGAAAUCUC-------UCACUUAACAUGCUUGACUCAAGAUAU----AU ((..(((((.((((...........)---)))...)))))--..)).((((((((..((....(((.((((((.......-------....)))))))))...))...))))))----)) ( -23.60) >DroSec_CAF1 73422 105 + 1 AGCGCAUACUUUACUUUUUAUGCCUAUGGUGAUAUUUGUG--UGCUUGUGUAUCUCUGUAUUUGCACUGUGAGAAAUCUC-------UCACUUUACAUGCUUGACUCAAGAUAU------ ((((((((..(((((............)))))....))))--))))...((((((..((....(((..((((((....))-------))))......)))...))...))))))------ ( -24.10) >DroSim_CAF1 74207 95 + 1 AGUGCAUACUUUACUUUUUAUGCCUAU----------GUG--UGCUUGUGUAUCUCUGUAUUUGCACUGUGAGAAAUCUC-------UCACUUAACAUGCUUGACUCAAGAUAU------ ...((((((..................----------)))--)))....((((((..((....(((..((((((....))-------))))......)))...))...))))))------ ( -19.77) >DroEre_CAF1 75371 110 + 1 AGUGAAUACUUUACUUUUUAUGCCUG---UGCUAUGUGUGAGUGUUUGUGUAU--GUGUUUUUGCACUGUGAGAAAUCUUUAAUAAAGCAUUCAACA-----GGCUCAAGCUCUGAAGAU .............((((....((.((---.(((.(((.((((((((((((((.--.......)))))...((....)).......))))))))))))-----))).)).))...)))).. ( -26.40) >DroYak_CAF1 79584 105 + 1 CGUGCAUACUUUACUUUUUAUGCUUU---UCAUAUGUGUGGC---------UU--GUGUGUUUGCACUGUGAGAAA-CUUUAAUAAAUCAUUCAACAUGUUUGACUCGAGCUCUGAAGAU ...(((((..........)))))(((---(((((.(((..((---------..--....).)..))))))))))).-.........(((.((((....(((((...)))))..))))))) ( -18.80) >consensus AGUGCAUACUUUACUUUUUAUGCCUA___UGAUAUGUGUG__UGCUUGUGUAUCUCUGUAUUUGCACUGUGAGAAAUCUC_______UCACUUAACAUGCUUGACUCAAGAUAU____AU ((((((.....(((...........................................)))..)))))).................................................... ( -2.27 = -2.95 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:08 2006