Locus 5209

Sequence ID 3R_DroMel_CAF1
Location 13,641,486 – 13,641,587
Length 101
Max. P 0.911113
window8498

overview

Window 8

Location 13,641,486 – 13,641,587
Length 101
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 79.24
Mean single sequence MFE -10.93
Consensus MFE -9.95
Energy contribution -9.73
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -1.04
Structure conservation index 0.91
SVM decision value 1.07
SVM RNA-class probability 0.911113
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13641486 101 + 27905053
CAACUCUCUUCUGUAACUACAGUAGAACAUCGAUUUGUCAGAUAUUUACAUCUUAUAGAUAUCAUCUUUAAAUUCAACUUGUAUAUAAAACGUUUUAAAUA
..........((((....))))((((((...((....)).((((((((.......))))))))............................)))))).... ( -10.80)
>DroSec_CAF1 6656 87 + 1
CAACUCUCUUCUGUAACUACAGUAGAACAUCGAUUUGUCAGGUAGUUACAUCUUAUAGAUAUCAUCUUUAUAUUCAACUCUUAU--------------AUA
...........(((((((((....((.((......))))..)))))))))...((((((.......))))))............--------------... ( -11.50)
>DroSim_CAF1 6235 78 + 1
CAACUGUCUUCUGUAACUACAGUAGAACAUCGAUUUGUCAGAUAGUUACAUCUUAUAGAUAUCAUCUUAAUAAUCAAC-----------------------
.((((((((.((((....))))..((.((......))))))))))))..(((.....)))..................----------------------- ( -10.50)
>consensus
CAACUCUCUUCUGUAACUACAGUAGAACAUCGAUUUGUCAGAUAGUUACAUCUUAUAGAUAUCAUCUUUAUAUUCAACU__UAU______________AUA
......(((.((((....)))).)))......((((((.((((......)))).))))))......................................... ( -9.95 =  -9.73 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:05 2006