| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,640,301 – 13,640,411 |
| Length | 110 |
| Max. P | 0.616024 |
| Location | 13,640,301 – 13,640,411 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.13 |
| Mean single sequence MFE | -33.57 |
| Consensus MFE | -16.89 |
| Energy contribution | -18.54 |
| Covariance contribution | 1.65 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616024 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13640301 110 + 27905053 GCGGGGAAAAUAGCUGCGGAAGUGC-U-----UUCCCUCACUCUUCAUUUCCC----UCUCUCCAAUUCUCGCGCUGCACUUCAAUUUGUGAUAGUUGUUGCCGUGGAGCUGGGGGGGAU ..((((((...(((.((....))))-)-----))))))........((..(((----((.(((((......(((((((((........))).))).))).....)))))..)))))..)) ( -37.60) >DroSec_CAF1 5508 111 + 1 GCGGGGAAAAUAGCUGCGGAAGUGCCU-----UUCCCUCACUCUUCUUUUCUC----UUUCUCCAAUUCUCGCGCUGCACUUCAAUUUGUGAUAGUUGUUGCCGAGAAACAGGAGGGGAU ..(((((((...((.((....)))).)-----))))))...........((((----(((((....((((((.((.((((((((.....))).)).))).))))))))..))))))))). ( -35.40) >DroSim_CAF1 5022 111 + 1 GCGGGGAAAAUAGCUGCGGAAGUGCUU-----UUCCCUCACUCUUCUUUUCUC----UUUCUCCAAUUCUCGCGCUGCACUUCAAUUUGUGAUAGUUGUUGCCGAGAAGCAGGAGGGGAU ..(((((((..(((.((....))))))-----))))))...........((((----(((((....((((((.((.((((((((.....))).)).))).))))))))..))))))))). ( -38.20) >DroEre_CAF1 5228 106 + 1 GCGGGGAAAAUAGCUGCGGAAGUGCU------AUGUC----UUGUCUAUUCUC----UUUCUCUAAUUCUCGCGCUGCACUUCAAUUUGUGAUAGUUGUUGCCGAGAAGCAGGAGGGGAU ((((((...(((((.((....)))))------)).))----))))....((((----(((((....((((((.((.((((((((.....))).)).))).))))))))..))))))))). ( -37.30) >DroYak_CAF1 4903 111 + 1 GUGGGGAAAAUAGCUGCGAAAGUGCCU-----CUCUCCCCUUUUCCUAUUCUC----UUUCUCUAAUUCUCGCGUUGAACUUCAAUUUGUGAUAGUUGUUAUCGAGAAGCAGGAGGGGAU ..(((((.....((.((....))))..-----...)))))...((((.((((.----(((((((((((.((((((((.....))))..)))).))))).....)))))).)))).)))). ( -33.00) >DroAna_CAF1 4596 104 + 1 ----AGAAAAUAUCAGCGGAAGUGGUUGCCUUCUCUAUUUCUCUACUUUUCUCUACUUUUCUCUAUUUCUCGGUCGGCACUUCAAUUUGUAA-AGUGCUUACCCCAGAG----------- ----((((((....((.((((((((.........))))))))))..))))))...............(((.(((.(((((((.........)-)))))).)))..))).----------- ( -19.90) >consensus GCGGGGAAAAUAGCUGCGGAAGUGCUU_____UUCCCUCACUCUUCUUUUCUC____UUUCUCCAAUUCUCGCGCUGCACUUCAAUUUGUGAUAGUUGUUGCCGAGAAGCAGGAGGGGAU ..(((((.....((.((....))))........)))))...................(((((((..((((((.((.((((((((.....))).))).)).))))))))...))))))).. (-16.89 = -18.54 + 1.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:05 2006