Locus 5204

Sequence ID 3R_DroMel_CAF1
Location 13,632,274 – 13,632,371
Length 97
Max. P 0.741975
window8492

overview

Window 2

Location 13,632,274 – 13,632,371
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 68.56
Mean single sequence MFE -22.58
Consensus MFE -6.26
Energy contribution -5.90
Covariance contribution -0.36
Combinations/Pair 1.56
Mean z-score -1.95
Structure conservation index 0.28
SVM decision value 0.45
SVM RNA-class probability 0.741975
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13632274 97 + 27905053
GCUUAAAUAUUAAGGGGGUUUCCGAAUCAUAAGGAUUAUGUGGUUCGUUUCUCCUAUCCUCAUGGGCGAGAUUUAAAUCAAUAUCGGAUUCCUCUGC
.............(((((..(((((((((((.......))))))))(((((.(((((....))))).))))).............)))..))))).. ( -27.30)
>DroSec_CAF1 10683 97 + 1
UCUUAAAUAUUAAGGGUGAUUCCGAAUCAUGAGGAUUAUGUGGUCCGUUUCUACUAUCUUCAUUCUCGAGAUUUAGAUCAAUUUCGGAUUGCUCUGC
............((((..((.(((((..((((((((...((((.......)))).))))))))......(((....)))...)))))))..)))).. ( -25.40)
>DroSim_CAF1 10770 97 + 1
GCUUAAAUAUUAAGGGCGAUUCCGAAUCAUUAGGAUUAUGUGGUCCGUUUCUAUUAUCUUCAUUGUCGAGAUUUAGAUCUUUUUCGGAUUCCUCUGC
............((((.((.((((((......(((((....)))))...((((..(((((.......))))).)))).....)))))).)))))).. ( -22.90)
>DroEre_CAF1 12316 76 + 1
GCUUAA-UCU--UGGGAGAUUCCUGAUCAAUUAGGUUGUGUAGUCUUUUUUCUUCAUCUUGAUC------------------AUCGUGUUCCCCUGC
......-...--.(((((.....((((((...((((.(...((........)).))))))))))------------------).....))))).... ( -12.80)
>DroYak_CAF1 12559 94 + 1
GCUUAA-CAU--GGGAUGAUUCUGGAUCAUUAAAGUUAUGUGGUCUUUUUUCUUCAUCUUCAUUGUUGAGAUGAAAAUAAGAAUCACAUUCCUCUGC
......-((.--((((((((((((((((((.........)))))))......(((((((.((....)))))))))....)))))))...)))).)). ( -24.50)
>consensus
GCUUAAAUAUUAAGGGUGAUUCCGAAUCAUUAGGAUUAUGUGGUCCGUUUCUAUUAUCUUCAUUGUCGAGAUUUAAAUCAAUAUCGGAUUCCUCUGC
.............(((.((.(((((.......(((((....)))))............(((......))).............))))).)).))).. ( -6.26 =  -5.90 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:59 2006