Locus 5203

Sequence ID 3R_DroMel_CAF1
Location 13,630,320 – 13,630,434
Length 114
Max. P 0.771716
window8491

overview

Window 1

Location 13,630,320 – 13,630,434
Length 114
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 91.81
Mean single sequence MFE -17.40
Consensus MFE -13.95
Energy contribution -14.73
Covariance contribution 0.78
Combinations/Pair 1.07
Mean z-score -2.59
Structure conservation index 0.80
SVM decision value 0.53
SVM RNA-class probability 0.771716
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13630320 114 + 27905053
ACCAUAUCCUCAUACUCCUGCUGUUGCUCUUGCUCAUCAUCCUCCUUACUGAAGGGUAUUUCGCAGGCAAUAUCUUCAAAUUCCUUGUUCUCAUUAACCUCGCUUUCUUCCUCC
................(((((....((....)).....(((((.(.....).))))).....)))))............................................... ( -13.40)
>DroSec_CAF1 8756 114 + 1
ACCAUAUCCUCACACUCCUGUUUUUGCUCUUGCUCAUUAUCCUCCUUAUUGGAGGGUAUUUCGCUGGCAAUAUCUACACAUUCCUUCUGCUCAUCAACCUCGCUUUCUUCCUCC
..................(((..(((((...((....((((((((.....))))))))....)).))))).....))).................................... ( -19.30)
>DroSim_CAF1 8823 114 + 1
ACCAUAUCCUCACACUCCUGUUUUUGCUCUUGAUCAUUAUCCUCCUUAUUGGAGGGUAUUUCGCUGGCAGUAUCUACAAAUUCCUUCUGCUCAUCAACCUCGCUUUCUUCCUCC
..................(((..(((((..(((....((((((((.....))))))))..)))..))))).....))).................................... ( -19.50)
>consensus
ACCAUAUCCUCACACUCCUGUUUUUGCUCUUGCUCAUUAUCCUCCUUAUUGGAGGGUAUUUCGCUGGCAAUAUCUACAAAUUCCUUCUGCUCAUCAACCUCGCUUUCUUCCUCC
.......................(((((...((....((((((((.....))))))))....)).)))))............................................ (-13.95 = -14.73 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:58 2006