Locus 5202

Sequence ID 3R_DroMel_CAF1
Location 13,625,920 – 13,626,013
Length 93
Max. P 0.611757
window8490

overview

Window 0

Location 13,625,920 – 13,626,013
Length 93
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 83.84
Mean single sequence MFE -25.98
Consensus MFE -17.14
Energy contribution -17.74
Covariance contribution 0.60
Combinations/Pair 1.32
Mean z-score -1.83
Structure conservation index 0.66
SVM decision value 0.16
SVM RNA-class probability 0.611757
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13625920 93 + 27905053
CUUCACUUAGUGAAAACUGAGU------------UGGCUCUGCAUCCAGUGGAAAGUCGUCUUCAUCCAGGACACCCUCACUAUCCGGCAACAACUCUGAGCUGA
....(((((((....)))))))------------.(((((.......(((((...((.(((((.....)))))))..)))))....(....)......))))).. ( -24.10)
>DroSec_CAF1 4531 93 + 1
CUUCACUUAGUGAAAACUGAGU------------UGGCUCUGCAUCCAGUGGAAAGCCUUCUUCAUCCAGGGCACCCUCACUAUCCGACCACAACUCAGAGCUGG
....(((((((....)))))))------------.(((((((......((((...(((((........)))))....((.......))))))....))))))).. ( -27.70)
>DroSim_CAF1 4568 93 + 1
CUUCACUUAGUGAAAACUGAGU------------UGGCUCUGCAUCCAGUGGAAAGUCCUCUUCAUCCAGGGCACCCUCACUAUCCGACCACAACUCUGAACUGA
.((((...(((....)))((((------------((((((((.((..((.((.....)).))..)).))))))....((.......))...)))))))))).... ( -21.50)
>DroEre_CAF1 4532 93 + 1
CUUCACUUAGUGAAAACUGAGU------------UGACUCUACAUCCAGUGGAAAGUCCUCUUCAUCCAGGGCACACUCACUAUCCGACCACAACUCGGGGUUAA
.(((((...)))))..((((((------------((..(((((.....)))))..(((((........)))))..................))))))))...... ( -24.10)
>DroYak_CAF1 4872 102 + 1
CUUCACUCAGUGA---CUGAGUGACUCUAGUGAGUGACUCUAGAUCCAGUGGAAAGUCCUCUUCAUCCAGGGCGCAAUCACUUUCGGACCACAGCUCUGGGCUGA
..((((((((...---))))))))((..((((((((.((((.(((..((.((.....)).))..))).)))))))..)))))...))....((((.....)))). ( -32.50)
>consensus
CUUCACUUAGUGAAAACUGAGU____________UGGCUCUGCAUCCAGUGGAAAGUCCUCUUCAUCCAGGGCACCCUCACUAUCCGACCACAACUCUGAGCUGA
....(((((((....)))))))............((((((.......(((((...(((((........)))))....)))))....((.......)).)))))). (-17.14 = -17.74 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:57 2006