Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,914,315 – 1,914,406 |
Length | 91 |
Max. P | 0.539340 |
Location | 1,914,315 – 1,914,406 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 74.09 |
Mean single sequence MFE | -12.41 |
Consensus MFE | -6.84 |
Energy contribution | -6.95 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -1.75 |
Structure conservation index | 0.55 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1914315 91 - 27905053 ACAAACGCAACAUUG-UUUAACUUAGUUCUGCUUUAAAAUAAGCUGGGUAAACUUACCCUUAAAAUCUUUGCCACUCUUCAUUUUCCCUCCC ......((((.....-(((((.........((((......)))).(((((....))))))))))....)))).................... ( -12.80) >DroSec_CAF1 72868 79 - 1 AUAAAAC--UCGUGCCUUUA-CAUAGUUGUGCUUUAAAAUAAGCUGAGCAAAGUUAGCCCAAAAAUCUUUGCCACACAAA----------CA .......--..(((......-.........((((......))))((.((((((.............)))))))))))...----------.. ( -11.42) >DroSim_CAF1 73630 90 - 1 AUAAAAC--UCGUGCCUUUAACUUAGUUUUGCUUUAAAAUAAGCUGAGCAAAGUUAGCCCUAAAAUCUUUGCCACACAUCAUUUUUACUCCC .......--..(((....((((((.((((.((((......)))).)))).))))))((............))..)))............... ( -13.00) >consensus AUAAAAC__UCGUGCCUUUAACUUAGUUCUGCUUUAAAAUAAGCUGAGCAAAGUUAGCCCUAAAAUCUUUGCCACACAUCAUUUU__CUCCC ..............................((((......))))((.((((((.............)))))))).................. ( -6.84 = -6.95 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:07 2006