Locus 5195

Sequence ID 3R_DroMel_CAF1
Location 13,617,802 – 13,617,893
Length 91
Max. P 0.520478
window8478

overview

Window 8

Location 13,617,802 – 13,617,893
Length 91
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 79.09
Mean single sequence MFE -24.27
Consensus MFE -10.87
Energy contribution -10.98
Covariance contribution 0.11
Combinations/Pair 1.07
Mean z-score -2.20
Structure conservation index 0.45
SVM decision value -0.03
SVM RNA-class probability 0.520478
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13617802 91 - 27905053
GGCCAAAUAAUGACUAUAUUAAAUAACAGUUAGCAAACAUU--AUUGCAUUGGC-CGCAGGCUGUGUAGCAGAGAU--GUGGCCAAAAGGCAUGG--C-------------
.(((......(((((............)))))((((.....--.)))).(((((-((((..(((.....)))...)--))))))))..)))....--.------------- ( -28.90)
>DroPse_CAF1 66817 106 - 1
AGCCAAAUAAUGACUAUAUUAAAUAACAGUUAGCGAACAUUGCAUUGCAUUGAC-CAAAGGC---GUUGCAUGGAUAUCUG-CCCAAAGGCACAAGGCAGAAGAGGCAGAA
.(((......(((((............))))).....(((.(((.(((.((...-..)).))---).))))))....((((-((...........))))))...))).... ( -22.10)
>DroEre_CAF1 57961 91 - 1
GGCCAAAUAAUGACUAUAUUAAAUAACAGUUAGCAAACAUU--AUUGCAUUGCC-CGCAGGCUGUGUAGCAAAGAU--CUGGCCAAAAGGCACGG--C-------------
(((((.((..((.((((((.............((((.....--.))))...(((-....))).))))))))...))--.)))))...........--.------------- ( -21.20)
>DroYak_CAF1 59335 91 - 1
GGCCAAAUAAUGACUAUAUUAAAUAACAGUUAGCAAACAUU--AUUGCAUUGCC-CGCAGGCUGUGUAGCAAAGAU--CUGGCCAAAAGGCACGG--C-------------
(((((.((..((.((((((.............((((.....--.))))...(((-....))).))))))))...))--.)))))...........--.------------- ( -21.20)
>DroAna_CAF1 57580 93 - 1
GGCCAAAUAAUGACUAUAUUAAAUAACAGUUAGCAAACAUU--AUUGCAUUGGCCCAAAGGCAGUAUAGCACAGAU--CUAGCCAAAAGGCUAGA--CA------------
((((((....(((((............)))))((((.....--.)))).)))))).....((......)).....(--((((((....)))))))--..------------ ( -25.80)
>DroPer_CAF1 68015 106 - 1
AGCCAAAUAAUGACUAUAUUAAAUAACAGUUAGCGAACAUUGCAUUGCAUUGGC-CAAAGGC---GUUGCAUGGAUAUCUG-CCUAAAGGCACAAGGCAGAAGAGGCAGAA
..(((.....(((((............)))))((((.((.(((...))).))((-(...)))---.)))).)))...((((-(((....((.....)).....))))))). ( -26.40)
>consensus
GGCCAAAUAAUGACUAUAUUAAAUAACAGUUAGCAAACAUU__AUUGCAUUGGC_CAAAGGCUGUGUAGCAAAGAU__CUGGCCAAAAGGCACGA__C_____________
.(((......(((((............)))))((((........))))...........)))...................(((....))).................... (-10.87 = -10.98 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:46 2006