Locus 5194

Sequence ID 3R_DroMel_CAF1
Location 13,616,015 – 13,616,115
Length 100
Max. P 0.696927
window8477

overview

Window 7

Location 13,616,015 – 13,616,115
Length 100
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 87.00
Mean single sequence MFE -29.13
Consensus MFE -24.56
Energy contribution -24.95
Covariance contribution 0.39
Combinations/Pair 1.20
Mean z-score -1.81
Structure conservation index 0.84
SVM decision value 0.34
SVM RNA-class probability 0.696927
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13616015 100 - 27905053
--------------AUAACGACGUCGUCUCUGCCAAAGGAGUUCAGCGCUGAACGGCCACGCCCCCCAGCCGGCUAAACUAACAGCUUCAAUGGGGCA------GCAAAAACGACUUUAA
--------------........(((((.(.(((....((.(((((....)))))..))..(((((......((((........)))).....))))).------))).).)))))..... ( -31.00)
>DroSec_CAF1 64933 100 - 1
--------------AUAACGACGUCGUCUCUGCCAAAGGAGUUCAGCGCUGAACGGCCACGCCCCCCAGCCGGCUAAACUAACAGCUCCAAUGGGGCA------GCAAAAGCGACUUUAA
--------------........((((..(.(((....((.(((((....)))))..))..(((((......((((........)))).....))))).------))).)..))))..... ( -31.70)
>DroSim_CAF1 58546 100 - 1
--------------AUAACGACGUCGUCUCUGCCAAAGGAGUUCAGCGCUGAACGGCCACGCCCCCCAGCCGGCUAAACUAACAGCUCCAAUGGGGCA------GCAAAAGCGACUUUAA
--------------........((((..(.(((....((.(((((....)))))..))..(((((......((((........)))).....))))).------))).)..))))..... ( -31.70)
>DroEre_CAF1 56122 100 - 1
--------------AUAACGACGUCGUCUCUGCCAAAGGAGUUCAGUGCUGAACGGCCACGCCCCUCAGCCGGCUAAACUAACAGCUCCAAUGGGGCA------GCAAAAACGACUUUAA
--------------........(((((.(.(((....((.(((((....)))))..))..(((((......((((........)))).....))))).------))).).)))))..... ( -31.70)
>DroYak_CAF1 57534 100 - 1
--------------AUAACGACGUCGUCUCUGCCAAAGGAGUUCAGCGCUGAACGGCCACGCCCCCCAGCCGGCUAAACUAACAGCUCCAAUGGGACA------GCAAAAACGACUUUAA
--------------........(((((((((......))))......((((...(((...))).((((...((((........))))....)))).))------))....)))))..... ( -26.80)
>DroAna_CAF1 56008 118 - 1
AUCCAUGUACACACAUAACGACGUCGUCUCUGCCGAAAGAGUUCGGCUCUGAACGACCACGCCCCCCA-CCGGUUAAACUAACAGCUCCAAUACAGCAAUGUCAGUAAGAA-AACCCUAA
....((((....))))......(((((.((.((((((....))))))...)))))))...........-..((((..(((.((((((.......)))..))).))).....-)))).... ( -21.90)
>consensus
______________AUAACGACGUCGUCUCUGCCAAAGGAGUUCAGCGCUGAACGGCCACGCCCCCCAGCCGGCUAAACUAACAGCUCCAAUGGGGCA______GCAAAAACGACUUUAA
......................(((((.(.(((....((.(((((....)))))..))..(((((......((((........)))).....))))).......))).).)))))..... (-24.56 = -24.95 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:45 2006