Locus 5193

Sequence ID 3R_DroMel_CAF1
Location 13,615,563 – 13,615,655
Length 92
Max. P 0.617893
window8476

overview

Window 6

Location 13,615,563 – 13,615,655
Length 92
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 92.75
Mean single sequence MFE -23.72
Consensus MFE -19.76
Energy contribution -19.56
Covariance contribution -0.20
Combinations/Pair 1.09
Mean z-score -1.35
Structure conservation index 0.83
SVM decision value 0.17
SVM RNA-class probability 0.617893
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13615563 92 + 27905053
AAACAG------AAACAGUAAAUGUAACAUGUGAGCAUUGGGGUGGUCC-CCAGAUCUUGGUGAAUUAUUAUGAUCUACGGGUUCCCCCAUACGAAAGU
..(((.------..(((.....)))....)))......(((((.(..((-(.(((((.(((((...))))).)))))..)))..)))))).((....)) ( -23.60)
>DroSec_CAF1 64448 92 + 1
AAACAG------AAACAGUAAAUGUAACAUGUGAGCAUUGGGGUGGUCC-CCAGAUCUUGGUGAAUUAUUAUGAUCUACGGGUUCCCCCAUAGGAAAGU
..(((.------..(((.....)))....)))......(((((.(..((-(.(((((.(((((...))))).)))))..)))..))))))......... ( -22.10)
>DroSim_CAF1 58102 92 + 1
AAACAG------AAACAGUAAAUGUAACAUGUGAGCAUUGGGGUGGUCC-CCAGAUCUUGGUGAAUUAUUAUGAUCUACGGGUUCCCCCAUAGGAAAGU
..(((.------..(((.....)))....)))......(((((.(..((-(.(((((.(((((...))))).)))))..)))..))))))......... ( -22.10)
>DroEre_CAF1 55641 98 + 1
AAACAGAAACAGAAACAGUAAAUGUAACAUGUGAGCAUUGGGGUGGUCC-CCAGAUCUUGGUGAAUUAUUAUGAUCUACGGAUUGCCCUAUAGGAAAGU
.....(..(((...(((.....)))....)))...)..(((((..((((-..(((((.(((((...))))).)))))..))))..)))))......... ( -25.60)
>DroYak_CAF1 57080 99 + 1
AAACAGAAACAGAAACAGUAAAUGUAACAUGUGAGCAUUGGGGUGGUCCCCCAGAUCUCGGUGAAUAAUUAUGAUCUACGGGUUGCCCUAUACGAAAGU
.....(..(((...(((.....)))....)))...)..(((((..(.(((..(((((..(((.....)))..)))))..))))..))))).((....)) ( -25.20)
>consensus
AAACAG______AAACAGUAAAUGUAACAUGUGAGCAUUGGGGUGGUCC_CCAGAUCUUGGUGAAUUAUUAUGAUCUACGGGUUCCCCCAUAGGAAAGU
....................(((((.........)))))((((..((((...(((((.((((.....)))).)))))..))))..)))).......... (-19.76 = -19.56 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:44 2006