| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,614,508 – 13,614,601 |
| Length | 93 |
| Max. P | 0.625954 |
| Location | 13,614,508 – 13,614,601 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 80.12 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -16.83 |
| Energy contribution | -17.38 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625954 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13614508 93 + 27905053 -------CUUGGAGUUCGACUCCA------------ACU------UCGAUCCCAGAUGCGCCAGUCGAGAGUCAAAGUUGAACAGCAACAUGGACUUUAAAAUCUCCGGCCAUUGAUU -------.((((((.....)))))------------)..------..((((...((((.(((((...((((((...((((.....))))...)))))).....))..))))))))))) ( -24.00) >DroSec_CAF1 63403 93 + 1 -------CUUGGAGUUCGACUCCA------------ACU------CCGAUCCCAGAUGCGCCAGUCGAGAGUCAAAGUUGAACAGCAACAUGGACUUUAAAAUCUCCGGCCAUUGAUU -------.((((((((.......)------------)))------)))).....((((.(((((...((((((...((((.....))))...)))))).....))..))))))).... ( -24.40) >DroSim_CAF1 57055 93 + 1 -------CUUGGAGUUCGACUCCA------------ACU------CCGAUCCCAGAUGCGCCAGUCGAGAGUCAAAGUUGAACAGCAACAUGGACUUUAAAAUCUCCGGCCAUUGAUU -------.((((((((.......)------------)))------)))).....((((.(((((...((((((...((((.....))))...)))))).....))..))))))).... ( -24.40) >DroEre_CAF1 54563 99 + 1 -------CUUGGAGUUCGACUCCG------------ACUCCGAGUCUGAUCCCAGAUGCGCCAGUCGAGAGUCAAAGUUGAACAGCAACAUGGACUUUAAAGUCUCUGGCCAUUGAUU -------((((((((.((....))------------))))))))((((....))))((.(((((.(.((((((...((((.....))))...))))))...)...)))))))...... ( -34.10) >DroYak_CAF1 55983 118 + 1 ACUCCGACUUGGAGUUCGACUCCGUCUCUGACUCCGACUGCGACUUCGAUCCCAGAUGCGCCAGUCGAGAGUCAAAGUUGAACAGCAACAUGGACUUUAAAGUCUCUGGCCAUUGAUU .....(((((((((.....))))((((.((((((((((((((...((.......))..)).)))))).))))))..((((.....))))..))))....))))).............. ( -38.80) >DroAna_CAF1 54715 84 + 1 -------CUCCAAGUCAGACUCCG------------ACU------CCGGAC---------CCAGUCGAGAGUCAAAGUUGAACAGCGACAUGGGCCCAAAAUCUUUUGGCCAUUGAUU -------...((.(((.(((((((------------(((------......---------..))))).)))))...(((....)))))).))((((.(((....)))))))....... ( -25.80) >consensus _______CUUGGAGUUCGACUCCA____________ACU______CCGAUCCCAGAUGCGCCAGUCGAGAGUCAAAGUUGAACAGCAACAUGGACUUUAAAAUCUCCGGCCAUUGAUU .........(((((.....)))))..............................((((.(((((...((((((...((((.....))))...)))))).....))..))))))).... (-16.83 = -17.38 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:43 2006