Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,612,177 – 13,612,268 |
Length | 91 |
Max. P | 0.801674 |
Location | 13,612,177 – 13,612,268 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 80.25 |
Mean single sequence MFE | -29.90 |
Consensus MFE | -17.88 |
Energy contribution | -21.13 |
Covariance contribution | 3.25 |
Combinations/Pair | 1.17 |
Mean z-score | -2.10 |
Structure conservation index | 0.60 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13612177 91 - 27905053 UUGCGCGUCGCAGGUGCGAUUAUGCACAUUAGAUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAGUCCAGCUGCUG-CUGAUAAGCCAGCU--- ((((((...((((((((((..((((((....).))))))))))))))).((....))..))))))....(((((..(-((....))))))))--- ( -32.00) >DroSec_CAF1 61052 91 - 1 UUGCGCGUCGCAGGUGCGAUUGUGCACAUUAGGUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAGUCCAGCUGCUG-CUGAUAAGCCAGCU--- ((((((...((((((((((..((((((.....)))))))))))))))).((....))..))))))....(((((..(-((....))))))))--- ( -36.00) >DroSim_CAF1 54768 91 - 1 UUGCGCGUCGCAGGUGCGAUUGUGCACAUUAGGUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAGUCCAGCUGCUG-CUGAUAAGCCAGCU--- ((((((...((((((((((..((((((.....)))))))))))))))).((....))..))))))....(((((..(-((....))))))))--- ( -36.00) >DroEre_CAF1 52207 79 - 1 UUGCGCGACGCAGGUGCGAU---------UAGGUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAGUCCAGCUG----CUGAUAAGCCAGCU--- ((((((...((((((((((.---------.........)))))))))).((....))..))))))....(((((----((....)).)))))--- ( -26.40) >DroYak_CAF1 53526 88 - 1 UUGCGCGACGCAGUUGCGAUUAUGCACAUUAGGUGCAUUAGUAUCUGUCGUUUUGACAAGUGCAACUCCAGCUG----CUGAUAAGCCAGCU--- (((((((((((((.(((....((((((.....))))))..))).))).)))).......))))))....(((((----((....)).)))))--- ( -29.21) >DroAna_CAF1 52233 82 - 1 UUACGCGAUACAGAUACACAGACGCAGAU-----ACAGAUGCAUC--------UGACAAGUGCAAGUCCAGCUGCUGGCUGAUAAGCGGGCUCUG ..........((((....((((.(((...-----.....))).))--------))..................(((.(((....))).))))))) ( -19.80) >consensus UUGCGCGACGCAGGUGCGAUUAUGCACAUUAGGUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAGUCCAGCUGCUG_CUGAUAAGCCAGCU___ ((((((...((((((((((..(((((.......))))))))))))))).((....))..))))))....(((((((........))).))))... (-17.88 = -21.13 + 3.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:42 2006