Locus 519

Sequence ID 3R_DroMel_CAF1
Location 1,913,263 – 1,913,364
Length 101
Max. P 0.517489
window831

overview

Window 1

Location 1,913,263 – 1,913,364
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.79
Mean single sequence MFE -22.88
Consensus MFE -16.66
Energy contribution -16.88
Covariance contribution 0.22
Combinations/Pair 1.10
Mean z-score -1.13
Structure conservation index 0.73
SVM decision value -0.03
SVM RNA-class probability 0.517489
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1913263 101 - 27905053
AAUGUGGUAAAGUAAAUUAUUUGCCCAACGGCUAAUGACAAUGGCAUUGGCCACUACGACAACAGCAACAACA---------------UAUCGACCCAUCGAAG----UGGCAACAACUG
..((.((((((........))))))))..((((((((.......))))))))..........(((......((---------------(.((((....)))).)----)).......))) ( -23.62)
>DroPse_CAF1 57867 111 - 1
AAUGUGGUAAAGUAAAUUAUUUGCCCAACGGCUAAUGACAAUGGCAAUGGCAACAGCAA---------CAACAACAACUUUCAGCAUGAACCGCCUCGCCGAACAGUUGGGCAACCUCAG
..((.(((.(((((...)))))((((((((........)..((((...(((..((((..---------...............)).))....)))..))))....))))))).))).)). ( -24.93)
>DroSec_CAF1 71843 101 - 1
AAUGUGGUAAAGUAAAUUAUUUGGCCAACGGCUAAUGACAAUGGCAUUGGCCACUACGACAACAGCAACAACC---------------CACCGACCCAUCGAAG----UGGCAACAACAG
..((((((.(((((...)))))((((((..((((.......)))).))))))))))))..............(---------------((((((....)))..)----)))......... ( -21.90)
>DroSim_CAF1 72605 101 - 1
AAUGUGGUAAAGUAAAUUAUUUGCCCAACGGCUAAUGACAAUGGCAUUGGCCACUACGACAACAGCAACAACC---------------CACCGACCCAUCGAAG----UGGCAACAACAG
..((.((((((........))))))))..((((((((.......))))))))....................(---------------((((((....)))..)----)))......... ( -22.40)
>DroEre_CAF1 73784 102 - 1
AAUGUGGUAAAGUAAAUUAUUUGCCCAACGGCUAAUGACAAUGGCAUUGGCCACUACGACAACAACAACAAGAG--------------CGACGGUCUAUCGAAU----UGGCAGCAACAG
..((.((((((........))))))))..((((((((.......)))))))).....................(--------------(....(((........----.))).))..... ( -21.40)
>DroYak_CAF1 77992 99 - 1
AAUGUGGUAAAGUAAAUUAUUUGCCCAACGGCUAAUGACAAUGGCAUUGGCCACUACGACAGCAACAACAGGA-----------------ACGGUCCAUCGAAG----UGGCAACAACAG
..((.((((((........))))))))...((((.......))))....((((((.(((..(......).(((-----------------....))).))).))----))))........ ( -23.00)
>consensus
AAUGUGGUAAAGUAAAUUAUUUGCCCAACGGCUAAUGACAAUGGCAUUGGCCACUACGACAACAGCAACAACA_______________CACCGACCCAUCGAAG____UGGCAACAACAG
..((.((((((........))))))))..((((((((.......)))))))).......................................(((....))).......((....)).... (-16.66 = -16.88 +   0.22) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:06 2006