Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,913,263 – 1,913,364 |
Length | 101 |
Max. P | 0.517489 |
Location | 1,913,263 – 1,913,364 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.79 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -16.66 |
Energy contribution | -16.88 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.10 |
Mean z-score | -1.13 |
Structure conservation index | 0.73 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517489 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1913263 101 - 27905053 AAUGUGGUAAAGUAAAUUAUUUGCCCAACGGCUAAUGACAAUGGCAUUGGCCACUACGACAACAGCAACAACA---------------UAUCGACCCAUCGAAG----UGGCAACAACUG ..((.((((((........))))))))..((((((((.......))))))))..........(((......((---------------(.((((....)))).)----)).......))) ( -23.62) >DroPse_CAF1 57867 111 - 1 AAUGUGGUAAAGUAAAUUAUUUGCCCAACGGCUAAUGACAAUGGCAAUGGCAACAGCAA---------CAACAACAACUUUCAGCAUGAACCGCCUCGCCGAACAGUUGGGCAACCUCAG ..((.(((.(((((...)))))((((((((........)..((((...(((..((((..---------...............)).))....)))..))))....))))))).))).)). ( -24.93) >DroSec_CAF1 71843 101 - 1 AAUGUGGUAAAGUAAAUUAUUUGGCCAACGGCUAAUGACAAUGGCAUUGGCCACUACGACAACAGCAACAACC---------------CACCGACCCAUCGAAG----UGGCAACAACAG ..((((((.(((((...)))))((((((..((((.......)))).))))))))))))..............(---------------((((((....)))..)----)))......... ( -21.90) >DroSim_CAF1 72605 101 - 1 AAUGUGGUAAAGUAAAUUAUUUGCCCAACGGCUAAUGACAAUGGCAUUGGCCACUACGACAACAGCAACAACC---------------CACCGACCCAUCGAAG----UGGCAACAACAG ..((.((((((........))))))))..((((((((.......))))))))....................(---------------((((((....)))..)----)))......... ( -22.40) >DroEre_CAF1 73784 102 - 1 AAUGUGGUAAAGUAAAUUAUUUGCCCAACGGCUAAUGACAAUGGCAUUGGCCACUACGACAACAACAACAAGAG--------------CGACGGUCUAUCGAAU----UGGCAGCAACAG ..((.((((((........))))))))..((((((((.......)))))))).....................(--------------(....(((........----.))).))..... ( -21.40) >DroYak_CAF1 77992 99 - 1 AAUGUGGUAAAGUAAAUUAUUUGCCCAACGGCUAAUGACAAUGGCAUUGGCCACUACGACAGCAACAACAGGA-----------------ACGGUCCAUCGAAG----UGGCAACAACAG ..((.((((((........))))))))...((((.......))))....((((((.(((..(......).(((-----------------....))).))).))----))))........ ( -23.00) >consensus AAUGUGGUAAAGUAAAUUAUUUGCCCAACGGCUAAUGACAAUGGCAUUGGCCACUACGACAACAGCAACAACA_______________CACCGACCCAUCGAAG____UGGCAACAACAG ..((.((((((........))))))))..((((((((.......)))))))).......................................(((....))).......((....)).... (-16.66 = -16.88 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:06 2006