| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 13,603,812 – 13,603,905 |
| Length | 93 |
| Max. P | 0.539244 |
| Location | 13,603,812 – 13,603,905 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 72.45 |
| Mean single sequence MFE | -29.55 |
| Consensus MFE | -15.84 |
| Energy contribution | -17.48 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13603812 93 - 27905053 A---CCAUGGUCAUGGCCAUGGGCACAGCCAUGGUCAUCAUCAUGCUGGCAAGCGCAGUUUGGAUGCUGGAUCUGGCGACAAGGCUGCGAAAAAUG .---(((((((....)))))))((.((((.(((((....)))))))))))...((((((((.(.((((......)))).).))))))))....... ( -38.30) >DroSec_CAF1 52798 84 - 1 A---UCAU---------CAUGGGCACAGCCAUGGUCAUCAUCAUGCUGGCAAGCGCAGUUUGGAUGCUGGAUCUGGCGACAAGGCUGCCAAAAAUG .---....---------....(((((.((((.((((..((((..(((((....).))))...))))...))))))))......).))))....... ( -25.00) >DroSim_CAF1 46501 84 - 1 A---CCAU---------CAUGGGCACAGCCAUGGUCAUCAUCAUGCUGGCAAGCGCAGUUUGGAUGCUGGAUCUGGCGACAAGGCUGUCAAAAAUG .---((..---------...))(.((((((..((((..((((..(((((....).))))...))))...))))((....)).)))))))....... ( -25.50) >DroEre_CAF1 43924 93 - 1 A---CCAUGGUCAUGGUCAUGGUCAUAGCCAUGGUCAUCAUCAUGCCGCCAAGCGCAGCUUGGACGCUGGAUCUGGCGAUAAGGCUGCCAAAGGCG .---.((((((.(((..((((((....))))))..))).)))))).((((....(((((((...((((......))))...)))))))....)))) ( -42.60) >DroYak_CAF1 45188 93 - 1 A---CCAUGGGCAUGGUCAUGGGCAUAGCCAUGGUCAUCAUCACGCCGCCAAGCGCAGUUUGGAUGCUGGAUCUGGAGACAAGUCUGCCAAAAAUC .---.....((((((..(((((......)))))..)))......((..((((((...))))))..)).(((..((....))..))))))....... ( -31.10) >DroPer_CAF1 55836 78 - 1 ACGCCCACGGUCACAGUCACGGUCACAGUCACGGACACAGUCAUGCUGCCAAAAGGAGCCUGGAUGCCAACGCCAAUG------------------ ..(((((.(((..(.(((.((..........))))).(((.....)))......)..))))))..))...........------------------ ( -14.80) >consensus A___CCAUGGUCAUGGUCAUGGGCACAGCCAUGGUCAUCAUCAUGCUGCCAAGCGCAGUUUGGAUGCUGGAUCUGGCGACAAGGCUGCCAAAAAUG ....((((((......)))))).....((((.((((..((((..((((.......))))...))))...))))))))................... (-15.84 = -17.48 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:39 2006