Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 13,596,411 – 13,596,521 |
Length | 110 |
Max. P | 0.592073 |
Location | 13,596,411 – 13,596,521 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 83.40 |
Mean single sequence MFE | -27.23 |
Consensus MFE | -18.76 |
Energy contribution | -18.90 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.12 |
Mean z-score | -1.97 |
Structure conservation index | 0.69 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592073 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 13596411 110 + 27905053 -UGACAUAAAGCCAGAGGAUAUA--GAUUAUACUCACGUAUUGGAAUGGAAACACUUAAUGUGCGCUGAGUUCUGAAUGGAUAUCCAGACAUGAUUGUUUGAGACAGUCAUAU -...............((((((.--.(((..((((((((((..((.((....)).))...))))).)))))....)))..))))))....(((((((((...))))))))).. ( -31.00) >DroSec_CAF1 45418 112 + 1 -UGACAUAAAGCCAAAGAAUAUAUAUAUAGUACUCACGUAUUGGAAUGGAAACACUUAAUGUGCGCUGAGUUCUGAAUGGAUAUCCAGACAUGAUUGUUUGAAACUGUCAUAU -(((((............((((.(((.(((.((((((((((..((.((....)).))...))))).))))).))).))).)))).((((((....))))))....)))))... ( -27.90) >DroSim_CAF1 39108 110 + 1 -UGACAUAAAGCCAGAGGAUAUA--GAUUCUACUCACGUAUUGGAAUGGAAACACUUAAUGUGCGCUGAGUUCUGAAUGGAUAUCCAGACAUGAUUGUUUGAGACUGUCAUAU -(((((..........((((((.--.((((.((((((((((..((.((....)).))...))))).)))))...))))..))))))(((((....))))).....)))))... ( -33.20) >DroEre_CAF1 36134 111 + 1 AAAUCAGAGAACCAUUACAACUA--GUUUCUACUUACGUAUUGGAAUGGAAACACUUAAUGUGCGCUGAGUUCUGAAUGGAUAUCCAGACAUGAUUGUUUGAGACUGUCAUAU ...((((((((..((((....))--))))).((((((((((..((.((....)).))...))))).))))))))))...((((((((((((....)))))).)).)))).... ( -25.50) >DroWil_CAF1 46900 110 + 1 -UUAUUUCAAGAAUUGGGUUUUU--AAUUUCACUUACGUAUUGGAAUGGAAACAUUUAAUAUGUGCUGAGUUUUGUAUGGAUAUCCACACAUAAUUGUUUGAUACUGUCAUGU -.....((((((((((.......--...((((..(((((((((.((((....))))))))))))).))))...(((.(((....))).)))))))).)))))........... ( -21.90) >DroYak_CAF1 36597 111 + 1 GAAUCAUGGAACCUUUUAAACUA--GUUUCUACUUACGUAUUGGAAUGGAAACACUUAAUGUGCGCUGAGUUCUGAAUGGAUAUCCAGACAUGAUUGUUUGAGACUGUCAUAU ...(((.((((.((........)--).))))((((((((((..((.((....)).))...))))).)))))..)))...((((((((((((....)))))).)).)))).... ( -23.90) >consensus _UGACAUAAAGCCAUAGGAUAUA__GAUUCUACUCACGUAUUGGAAUGGAAACACUUAAUGUGCGCUGAGUUCUGAAUGGAUAUCCAGACAUGAUUGUUUGAGACUGUCAUAU ...............................((((((((((..((.((....)).))...))))).)))))........((((((((((((....)))))).)).)))).... (-18.76 = -18.90 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:38 2006