Locus 5187

Sequence ID 3R_DroMel_CAF1
Location 13,595,017 – 13,595,129
Length 112
Max. P 0.563162
window8469

overview

Window 9

Location 13,595,017 – 13,595,129
Length 112
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 85.42
Mean single sequence MFE -25.21
Consensus MFE -17.42
Energy contribution -17.36
Covariance contribution -0.06
Combinations/Pair 1.12
Mean z-score -1.53
Structure conservation index 0.69
SVM decision value 0.06
SVM RNA-class probability 0.563162
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13595017 112 - 27905053
UUAUGUUCGCAUGUGUCUCCAACAAUGAGAACGCAUGCCAAUGCGAUAGGCUUUUGU-AAAAAUCGUAGUCUAAGCAUCUCCCUAUUUUUAUUGUAUACAUACGCGCGUAAUA
((((((.((.((((((.....(((((((((((((((....))))).((((((..((.-......)).))))))............)))))))))))))))).)).)))))).. ( -28.50)
>DroSec_CAF1 44046 111 - 1
UUAUGUUCGCAUGUGUCUCCAACAAUGAGAACGCAUGCCCAUGCGAUAGGCU-UUGU-AAAAAUCGUAGUCUAAGCAUCUCCCUAUUUUUAUUGUAUGCAUACGCGCGUAAUA
((((((..(((((((((((.......))).))))))))....(((.((((((-.((.-......)).)))))).(((((..............).))))...))))))))).. ( -28.94)
>DroSim_CAF1 37287 111 - 1
UUAUGUUCGCAUGUGUCUCCAACAAUGAGGACGCAUGCCCAUGCGAUAGGCU-UUGU-AAAAAUCGUAGUCUAAGCAUCUCCCUAUUUUUAUUGUAUACAUACGCGCGUAAUA
((((((.((((((((((..((....))..)))))))))..((((..((((((-.((.-......)).)))))).)))).........................).)))))).. ( -30.10)
>DroAna_CAF1 33610 97 - 1
UUAUGUCUACAUGUGUUUC------UGAGUAAGCGUGCCCC--GGAUAGGCU--UGUAAAAAAUCGUACUUUAAGCAUCUCCCUAUUUUUAUCGUAUACAUACU------AUA
.(((((.(((..((((((.------.(((((.(((.(((..--.....))).--))).........))))).)))))).....((....))..))).)))))..------... ( -13.30)
>consensus
UUAUGUUCGCAUGUGUCUCCAACAAUGAGAACGCAUGCCCAUGCGAUAGGCU_UUGU_AAAAAUCGUAGUCUAAGCAUCUCCCUAUUUUUAUUGUAUACAUACGCGCGUAAUA
.(((((..(((((((((((.......))).))))))))......((((((....(((.................)))....))))))..........)))))........... (-17.42 = -17.36 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:37 2006