Locus 5183

Sequence ID 3R_DroMel_CAF1
Location 13,579,159 – 13,579,273
Length 114
Max. P 0.858248
window8464

overview

Window 4

Location 13,579,159 – 13,579,273
Length 114
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.11
Mean single sequence MFE -23.67
Consensus MFE -22.63
Energy contribution -22.30
Covariance contribution -0.33
Combinations/Pair 1.11
Mean z-score -1.77
Structure conservation index 0.96
SVM decision value 0.82
SVM RNA-class probability 0.858248
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13579159 114 - 27905053
------AGGGUAAUUACAUAUUCGACUCAUUUAUGUCGAGCUUUAAGUUAGCAUCACUAAAUAGCUAACACUAAACGAUGCUCGCUUCGAAAAUUGCAUCUGCAUAUAUACAUUUGUAUG
------(((((((((.....((((((........)))))).((.((((.((((((......(((......)))...)))))).)))).)).)))))).))).((((((......)))))) ( -23.30)
>DroSec_CAF1 20808 120 - 1
AACUCUAGGGUAAUCACUAAUUCGACACUUUUUUGUCGAGCUUUAAGUUAGCAUCACUAAAUAGCUAACACUAAACGAUGCUCGCUUCGAAAAUUGCAUCUGCAUAUAUACAUUUGUAUA
.......(((((.((.....(((((((......)))))))......((((((...........)))))).......)))))))...........(((....)))..(((((....))))) ( -23.90)
>DroSim_CAF1 19779 120 - 1
AACUCUAGGGCAAUCACUAAUUCGACUCUUUUUUGUCGAGCCUUAAGUCAGCAUCACUAAAUAGCUAACACUAAACGAUGCUCGCUUCGAAAAUUGCAUCUGCAUAUAUACAUUUGUAUA
.....((((((..........(((((........)))))))))))(((.((((((......(((......)))...)))))).)))........(((....)))..(((((....))))) ( -23.80)
>consensus
AACUCUAGGGUAAUCACUAAUUCGACUCUUUUUUGUCGAGCUUUAAGUUAGCAUCACUAAAUAGCUAACACUAAACGAUGCUCGCUUCGAAAAUUGCAUCUGCAUAUAUACAUUUGUAUA
.......(((((.((.....((((((........))))))......((((((...........)))))).......)))))))...........(((....)))..(((((....))))) (-22.63 = -22.30 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:32 2006