Locus 5182

Sequence ID 3R_DroMel_CAF1
Location 13,576,597 – 13,576,689
Length 92
Max. P 0.883316
window8463

overview

Window 3

Location 13,576,597 – 13,576,689
Length 92
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 69.97
Mean single sequence MFE -19.72
Consensus MFE -6.20
Energy contribution -7.90
Covariance contribution 1.70
Combinations/Pair 1.29
Mean z-score -2.23
Structure conservation index 0.31
SVM decision value 0.93
SVM RNA-class probability 0.883316
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 13576597 92 + 27905053
UGUUCCACUGAUUUCAGUACCUUCA-----AAUGUAAAUCAAU----CAACUCGUAUCUCUGGGCCCAUAUU------CUUUAUGAUGUCCUGAUAUCAGUUGAUAU
......((((....)))).......-----...........((----(((((.(((((...((((.((((..------...))))..)))).))))).))))))).. ( -23.00)
>DroPse_CAF1 31506 99 + 1
UGCUCCAUUGC-UCCACUGCUCUCU-CUCGGCUGUAAAUCAGGGCCACUACUACUAU--CUGUGC-UGUAUCUCUUGGAUUUAUGGUGCACCGAUAUCAGCU---AU
(((.((((...-((((.........-...((((.(.....).))))((...(((...--..))).-.))......))))...)))).)))............---.. ( -18.90)
>DroSec_CAF1 18287 92 + 1
UAUUCCACUGAUUUCAGUACCUCCUC----CAUGUAAAUCAAU----CAACUCGUAUCUCUGGGC-CAUAUU------CUUUAUGAUGUCCUGAUAUCAGUUGAUAU
......((((....))))........----...........((----(((((.(((((...((((-((((..------...))))..)))).))))).))))))).. ( -22.40)
>DroEre_CAF1 16934 91 + 1
UAUUCCACUGAAUUCAGUCCCUUCU-----CCUGUAAAUCAAU----CAACCCGUAUCUCUGGGC-UAUAUU------CUUUAUGAUGUCCUGAUACCACUUGAUAA
......((((....)))).......-----...........((----(((...(((((...((((-((((..------...))))..)))).)))))...))))).. ( -15.70)
>DroYak_CAF1 17081 91 + 1
UAUUCCACUGAUUUCAGUCCCUUCC-----CAUGUAAAUCAAU----CAAUGCGUAUCUCUAGGC-UUUAUG------CUUUAUGAUGUCCUGAUAUCAGUUGAAAU
..(((.((((((.((((..(.....-----.(((((.......----...)))))(((...((((-.....)------)))...))))..)))).)))))).))).. ( -20.70)
>DroPer_CAF1 32673 99 + 1
UGCUCCACUGC-UCCACUGCUCUCU-CUCGGCUGUAAAUCAGGGCCACUACUACUAU--CUGUGC-UGUAUCUCUUGGAUUUAUGGUGCAUCGAUAUCAGCU---AU
.((......))-......(((....-...((((.(.....).))))........(((--(((..(-((((..((...))..)))))..))..))))..))).---.. ( -17.60)
>consensus
UAUUCCACUGAUUUCAGUACCUUCU_____CAUGUAAAUCAAU____CAACUCGUAUCUCUGGGC_UAUAUU______CUUUAUGAUGUCCUGAUAUCAGUUGAUAU
......((((....)))).............................(((((.(((((...((((..(((...........)))...)))).))))).))))).... ( -6.20 =  -7.90 +   1.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:31 2006